Club MEG: Difference between revisions

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== Upcoming Talks/Discussions ==
== Upcoming Talks/Discussions ==
⚫
* '''10/21/2022 at 1:00pm''' Club MEG: MNE_BIDS/MNE_BIDS_PIPELINE/Biowulf MEG Bids Modules - Jeff Stout
* '''10/28/2022 at 1:00pm''' Club MEG: (Presentation) The neural mechanisms of afterimages: A model of illusory conscious perception - Sharif Kronemer
* '''10/28/2022 at 1:00pm''' Club MEG: (Presentation) The neural mechanisms of afterimages: A model of illusory conscious perception - Sharif Kronemer
* '''11/18/2022 at 1:00pm''' Club MEG: (Journal Club) - Anna Namyst
* '''11/18/2022 at 1:00pm''' Club MEG: (Journal Club) - Anna Namyst
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== Recent Talks/Discussions ==
== Recent Talks/Discussions ==
* '''10/07/2022''' - Sarah Grewal - [https://pubs.rsna.org/doi/10.1148/radiol.212453 On-Scalp Optically Pumped Magnetometers versus Cryogenic Magnetoencephalography for Diagnostic Evaluation of Epilepsy in School-aged Children (Journal Article)]
* '''10/07/2022''' - Sarah Grewal - [https://pubs.rsna.org/doi/10.1148/radiol.212453 On-Scalp Optically Pumped Magnetometers versus Cryogenic Magnetoencephalography for Diagnostic Evaluation of Epilepsy in School-aged Children (Journal Article)]
**[https://megcore.nih.gov/MEG/SarahGrewal_ClubMEG_10072022.mp4 Recording Download (mp4)]
⚫
* '''09/30/2022''' Tom Holroyd - Demonstration of SAM beamforming using Sequential Regression (SER) covariance updating for real-time analysis
* '''09/16/2022''' Lindsay Oberman - Autism background, MEG autism biomarkers, interventional approach, and preliminary study results
* '''09/16/2022''' Lindsay Oberman - Autism background, MEG autism biomarkers, interventional approach, and preliminary study results
**[https://megcore.nih.gov/MEG/Oberman_ClubMEG_09162022.mp4 Recording Download (mp4)]
** [https://pubmed.ncbi.nlm.nih.gov/25745372/ Prospective MEG biomarkers in ASD: pre-clinical evidence and clinical promise of electrophysiological signatures]
** [https://pubmed.ncbi.nlm.nih.gov/25745372/ Prospective MEG biomarkers in ASD: pre-clinical evidence and clinical promise of electrophysiological signatures]
* '''09/15/2022''' Discuss Biomag 2022 Presentations
* '''09/15/2022''' Biomag 2022 Recap
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* '''09/09/2022''' Anna Namyst and Jeff Stout - Eye Tracking
⚫
** https://jov.arvojournals.org/article.aspx?articleid=2772164
⚫
** https://www.biorxiv.org/content/10.1101/2021.07.09.451139v1.full.pdf
⚫
** Powerpoint to be uploaded soon --
* '''08/19/2022''' Kunjan Rana - Communication Between the Amygdala and Cortex in the Context of Face Processing
* '''08/19/2022''' Kunjan Rana - Communication Between the Amygdala and Cortex in the Context of Face Processing
* '''08/05/2022''' Shruti Japee - Temporal Dynamics of Facial Expression Processing
* '''08/05/2022''' Shruti Japee - Temporal Dynamics of Facial Expression Processing
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== Previous Tutorials and Training ==
== Previous Tutorials and Training ==
⚫
* Jeff Stout (10/21/2022) - MNE_BIDS/MNE_BIDS_PIPELINE/Biowulf MEG Bids Modules
* MNE-ARI (All Resolutions Imaging) Theoretical Overview and Demo - John Veillette - (University of Chicago) - 10/14/2022
**[https://megcore.nih.gov/MEG/Stout_MNE-BIDStutorial_10212022.mp4 Recording Download (mp4)]
* John Veillette, University of Chicago (10/14/2022) - MNE-ARI (All Resolutions Imaging) Theoretical Overview and Demo
**https://github.com/john-veillette/mne-ari
**https://github.com/john-veillette/mne-ari
**[https://megcore.nih.gov/MEG/Veillette_MNE-ARI_ClubMEG_10142022.mp4 Recording Download (mp4)]
**[https://megcore.nih.gov/MEG/Veillette_MNE-ARI_ClubMEG_10142022.mp4 Recording Download (mp4)]
⚫
* Tom Holroyd (09/30/2022) - Demonstration of SAM beamforming using Sequential Regression (SER) covariance updating for real-time analysis
⚫
*Connectivity Coding Zoom Call [[Meg_information_based_connectivity_coding_session]] - 08/12/2022
**[https://megcore.nih.gov/MEG/TomHolroyd_SAM-SER-RealtimeAnalysis_09302022.mp4 Recording Download (mp4)]
*Andrea Brovelli & Etienne Combrisson, FRITES Theoretical Overview and Demo (Connectivity Calculation and Stats) - 07/13/2022 - (Institut de Neurosciences de la Timone)
⚫
* Anna Namyst and Jeff Stout (09/09/2022) - Eye Tracking Overview
⚫
** https://jov.arvojournals.org/article.aspx?articleid=2772164
⚫
** https://www.biorxiv.org/content/10.1101/2021.07.09.451139v1.full.pdf
⚫
** Powerpoint to be uploaded soon
⚫
* Group Session (08/12/2022) - Connectivity Coding Zoom Call [[Meg_information_based_connectivity_coding_session]]
*Andrea Brovelli & Etienne Combrisson, Institut de Neurosciences de la Timone (07/13/2022) - FRITES Theoretical Overview and Demo (Connectivity Calculation and Stats)
**[https://megcore.nih.gov/MEG/FRITES_Tutorial_07132022.mp4 Recording Download (mp4)]
**[https://megcore.nih.gov/MEG/FRITES_Tutorial_07132022.mp4 Recording Download (mp4)]
**[https://brainets.github.io/frites/ Website and Github Page] [https://github.com/brainets/CookingFrites Example Training Notebooks]
**[https://brainets.github.io/frites/ Website and Github Page] [https://github.com/brainets/CookingFrites Example Training Notebooks]
**[https://doi.org/10.1016/j.neuroimage.2022.119347 Paper: Group-level inference of information-based measures for the analyses of cognitive brain networks from neurophysiological data]
**[https://doi.org/10.1016/j.neuroimage.2022.119347 Paper: Group-level inference of information-based measures for the analyses of cognitive brain networks from neurophysiological data]
*[https://megcore.nih.gov/index.php?title=MEG_Hackathon_2022 MEG Hackathon ] 05/06/2022
*[https://megcore.nih.gov/index.php?title=MEG_Hackathon_2022 MEG Hackathon ] 05/06/2022
*Eric Earl, Github Presentation and Discussion, 04/27/2022
*Eric Earl (04/27/2022) - Github Presentation and Discussion
**[https://docs.google.com/presentation/d/15l6Pb6pUICPSsJi3shWLiAJNlCkngHi0fzht7FKeyqM/edit?usp=sharing Presentation Slides] [https://slides.com/ericearl/gh-repo Advanced Github Features]
**[https://docs.google.com/presentation/d/15l6Pb6pUICPSsJi3shWLiAJNlCkngHi0fzht7FKeyqM/edit?usp=sharing Presentation Slides] [https://slides.com/ericearl/gh-repo Advanced Github Features]
** [https://megcore.nih.gov/MEG/EricEarl_ClubMEG_GitHubTutorial_04272022.mp4 Recording Download (mp4)]
** [https://megcore.nih.gov/MEG/EricEarl_ClubMEG_GitHubTutorial_04272022.mp4 Recording Download (mp4)]

Revision as of 19:30, 25 October 2022

Club MEG is our version of a journal club. We welcome NIH MEG researchers to lead discussions on any MEG topic, including interesting papers, experiment ideas, analysis techniques, or finding from your research.

Interested in presenting a topic? Email Fred Carver at carverf@nih.gov or Jeff Stout at stoutjd@nih.gov if you would like to present.

Notifications of upcoming talks are sent to the MEG_ANNOUNCE listserv.

Upcoming Talks/Discussions

  • 10/28/2022 at 1:00pm Club MEG: (Presentation) The neural mechanisms of afterimages: A model of illusory conscious perception - Sharif Kronemer
  • 11/18/2022 at 1:00pm Club MEG: (Journal Club) - Anna Namyst
  • 01/20/2023 at 1:00pm Club MEG: Lucrezia Liuzzi
  • 02/17/2023 at 1:00pm Club MEG: Gustavo Sudre
  • Date TBD Club MEG: Abbas Babajani-Feremi - (University of Florida)

Recent Talks/Discussions

Previous Tutorials and Training

Special Interest Groups

Machine Learning Special Interest Group (ML SIG) - 4th Friday of every month 1-2pm. Contact Jeff Stout for more information on joining or presenting.
Prior ML SIG topics:

References

  1. ↑ https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay Ethan R. Buch, Leonardo Claudino, Romain Quentin, Marlene Bönstrup, Leonardo Cohen
  2. ↑ https://github.com/hcps-ninds/Replay ANALYSIS CODE: Consolidation of human skill linked to waking hippocampo-neocortical replay
  3. ↑ Dash D, Ferrari P, Wang J. Decoding Imagined and Spoken Phrases From Non-invasive Neural (MEG) Signals. Front Neurosci. 2020;14:290. Published 2020 Apr 7. doi:10.3389/fnins.2020.00290
  4. ↑ Dash D, Wisler A, Ferrari P, Davenport EM, Maldjian J, Wang J. MEG Sensor Selection for Neural Speech Decoding. IEEE Access. 2020;8:182320-182337. doi:10.1109/access.2020.3028831
  5. ↑ Dash D, Ferrari P, Dutta S, Wang J. NeuroVAD: Real-Time Voice Activity Detection from Non-Invasive Neuromagnetic Signals. Sensors (Basel). 2020;20(8):2248. Published 2020 Apr 16. doi:10.3390/s20082248
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