NIH MEG Short Course 2018
MEG Short Course Agenda and Handouts:
Monday, August 6th, 2018
Building 10 FAES Classroom 3: B1C207
| 12:30 – 1:10 pm | MEG: The Basics Fred Carver |
| 1:10 – 1:50 pm | Introduction to Source Localization Tom Holroyd |
| 1:50 – 2:00 pm | Break |
| 2:00 – 2:40 pm | Instrumentation and Hardware Stephen Robinson |
| 2:40 – 3:20 pm | Applications: What can I do with MEG? Allison Nugent |
| 3:20 – 3:30 pm | Final Questions |
Tuesday, August 7th, 2018
Building 10 FAES Classroom 3: B1C207
| 12:30 – 12:50 pm | Data Editor and command line Preprocessing Allison Nugent |
| 12:50 – 1:30 pm | Placing fiducials, headmodel creation Allison Nugent |
| 1:30 – 1:50 pm | Synthetic Aperture Magnetometry Workflow Tom Holroyd |
| 1:50 – 2:00 pm | Break |
| 2:00 – 2:30 pm | Voxel-wise power estimates: sam_cov, sam_wts, sam_3d, and sam_4d Tom Holroyd |
| 2:30 – 3:00 pm | Induced power: sam_3dc Fred Carver |
| 3:00 – 3:30 pm | Advanced (and potentially dangerous) topics Allison Nugent |
Support tools for the hands-on training sessions
- Singularity container with the CTF DataEditor tool and the SAMsrc MEG tools running under CentOS 6.9
- Text editors available within the container for editing shell scripts: vim, nano, gedit
Usage: singularity shell --bind /data:/mnt/data megcore.img where the /data file system holds your CTF data set and mounts under /mnt/data inside the container (your /home directory and the /tmp file systems are automatically visible inside the container)
- Working on the NIH HPC systems
- Data are still available in /data/classes/meg, along with all necessary scripts
- Modules are now available for SAM (samsrcv3) and CTF (ctf).
- To begin:
Copy the data from /data/classes/meg Use the initialization script to configure your environment: $ . init_course.sh