NIH MEG Short Course 2018

MEG Short Course Agenda:

Building 10 FAES Classroom 3: B1C207

12:30 – 1:10 pm	MEG: The Basics Fred Carver
1:10 – 1:50 pm	Introduction to Source Localization Tom Holroyd
1:50 – 2:00 pm	Break
2:00 – 2:40 pm	Instrumentation and Hardware Stephen Robinson
2:40 – 3:20 pm	Applications: What can I do with MEG? Allison Nugent
3:20 – 3:30 pm	Final Questions

Building 10 FAES Classroom 3: B1C207

12:30 – 12:50 pm	Data Editor and command line Preprocessing Allison Nugent
12:50 – 1:30 pm	Placing fiducials, headmodel creation Allison Nugent
1:30 – 1:50 pm	Synthetic Aperture Magnetometry Workflow Tom Holroyd
1:50 – 2:00 pm	Break
2:00 – 2:30 pm	Voxel-wise power estimates: sam_cov, sam_wts, sam_3d, and sam_4d Tom Holroyd
2:30 – 3:00 pm	Induced power: sam_3dc Fred Carver
3:00 – 3:30 pm	Advanced (and potentially dangerous) topics Allison Nugent

Singularity container with the CTF DataEditor tool and the SAMsrc MEG tools running under CentOS 6.9

Text editors available within the container for editing shell scripts: vim, nano, gedit

Usage: singularity shell --bind /data:/mnt/data megcore.img

where the /data file system holds your CTF data set and mounts under /mnt/data inside the container

(your /home directory and the /tmp file systems are automatically visible inside the container)

Data will be available in /data/classes/meg, along with all necessary scripts

Modules are now available for SAM (samsrcv3) and CTF (ctf).

To begin:

Log in to the student account (NN is 1--30):

$ ssh -Y studentNN@felix.nimh.nih.gov

Once logged in, access the course materials with:

$ source init_course.sh