MEG Software and Analysis: Difference between revisions
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[mailto:holroydt@mail.nih.gov Tom Holroyd] has created a [https://singularity.lbl.gov/index.html Singularity] container for CentOS 6.9 and populated the container with the necessary libraries to run the DataEditor tool. This allows MEG users to run the DataEditor tool under the operating system (Windows, Mac OSX, Linux) of their choice. |
[mailto:holroydt@mail.nih.gov Tom Holroyd] has created a [https://singularity.lbl.gov/index.html Singularity] container for CentOS 6.9 and populated the container with the necessary libraries to run the DataEditor tool. This allows MEG users to run the DataEditor tool under the operating system (Windows, Mac OSX, Linux) of their choice. |
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Singularity is a |
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[https://en.wikipedia.org/wiki/Operating-system-level_virtualization Operating-system-level virtualization] solution where an operating system |
[https://en.wikipedia.org/wiki/Operating-system-level_virtualization Operating-system-level virtualization] solution where an operating system |
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can host another operating system in an isolated container. To run a Singularity container on your operating system, you need to install the Singularity software for your operating system. There are install packages for the major operating systems from the [https://singularity.lbl.gov/index.html Singularity website.] |
can host another operating system in an isolated container. To run a Singularity container on your operating system, you need to install the Singularity software for your operating system. There are install packages for the major operating systems from the [https://singularity.lbl.gov/index.html Singularity website.] |
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; Singularity container running CentOS 6.7 with the CTF DataEditor tool |
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: [https://megcore.nih.gov/MEG/ctf-6.1.14-beta.img ctf-6.1.14-beta.img] |
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: {| width=85% style="border: 1px solid lightgrey;" |
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| usage: singularity shell --bind /data:/mnt/data ctf-6.1.14-beta.img |
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| where the ''/data'' file system holds your CTF data set and mounts under /mnt/data inside the container |
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===== MEG Data Analysis ===== |
===== MEG Data Analysis ===== |
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Revision as of 14:15, 29 March 2018
Using the CTF DataEditor with a Singularity Container
The current version of the CTF DataEditor tool runs only under CentOS Linux version 6.9. To support the MEG user community, Tom Holroyd has created a Singularity container for CentOS 6.9 and populated the container with the necessary libraries to run the DataEditor tool. This allows MEG users to run the DataEditor tool under the operating system (Windows, Mac OSX, Linux) of their choice.
Singularity is a Operating-system-level virtualization solution where an operating system can host another operating system in an isolated container. To run a Singularity container on your operating system, you need to install the Singularity software for your operating system. There are install packages for the major operating systems from the Singularity website.
- Singularity container running CentOS 6.7 with the CTF DataEditor tool
- ctf-6.1.14-beta.img
usage: singularity shell --bind /data:/mnt/data ctf-6.1.14-beta.img where the /data file system holds your CTF data set and mounts under /mnt/data inside the container
MEG Data Analysis
This section covers all aspects of MEG data analysis. The following pages assume that you have AFNI installed and have a reasonably good idea of how to use it.