NIH MEG Short Course 2018: Difference between revisions
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==MEG Short Course Agenda and Handouts:==
This course was held August 6 and 7, 2018 at NIH. The course files are archived below:
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▲|2:00 – 2:40 pm ||[[Media:InstrumentationLecture.pdf|Instrumentation and Hardware]]<br/>Stephen Robinson
▲|2:40 – 3:20 pm ||[[Media:MEG_Applications.pdf|Applications: What can I do with MEG?]] <br/> Allison Nugent
|12:30 – 12:50 pm ||[[Media:Tutorial1_DataEditorPreprocessing.pdf|Data Editor and command line Preprocessing]] <br/> Allison Nugent▼
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|12:50 – 1:30 pm ||[[Media:Tutorial2_MRIHeadmodelPreprocessing.pdf|Placing fiducials, headmodel creation]] <br/> Allison Nugent▼
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|1:30 – 1:50 pm ||[[Media:Source_Localization.pdf|Synthetic Aperture Magnetometry Workflow]]<br/> Tom Holroyd▼
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|2:00 – 2:30 pm || Voxel-wise power estimates: sam_cov, sam_wts, sam_3d, and sam_4d <br/> Tom Holroyd
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Revision as of 15:31, 8 December 2021
MEG Short Course Agenda and Handouts:
This course was held August 6 and 7, 2018 at NIH. The course files are archived below:
1. Fred Carver | MEG: The Basics |
2. Tom Holroyd | Introduction to Source Localization |
3. Stephen Robinson | Instrumentation and Hardware |
4. Allison Nugent | Applications: What can I do with MEG? |
5. Allison Nugent | Data Editor and command line Preprocessing |
6. Allison Nugent | Placing fiducials, headmodel creation |
7. Tom Holroyd | Synthetic Aperture Magnetometry Workflow |
2:00 – 2:30 pm | Voxel-wise power estimates: sam_cov, sam_wts, sam_3d, and sam_4d Tom Holroyd |
2:30 – 3:00 pm | Induced power: sam_3dc Fred Carver |
3:00 – 3:30 pm | Advanced (and potentially dangerous) topics Allison Nugent |
Support tools for the hands-on training sessions
- Singularity container with the CTF DataEditor tool and the SAMsrc MEG tools running under CentOS 6.9
- Text editors available within the container for editing shell scripts: vim, nano, gedit
Usage: singularity shell --bind /data:/mnt/data megcore.img where the /data file system holds your CTF data set and mounts under /mnt/data inside the container (your /home directory and the /tmp file systems are automatically visible inside the container)
- Working on the NIH HPC systems
- Data are still available in /data/classes/meg, along with all necessary scripts
- Modules are now available for SAM (samsrcv3) and CTF (ctf).
- To begin:
Copy the data from /data/classes/meg Use the initialization script to configure your environment: $ . init_course.sh