NIH MEG Short Course 2018: Difference between revisions
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==MEG Short Course Agenda and Handouts:==
This course was held August 6 and 7, 2018 at NIH. The course files are archived below:
{| class = "wikitable"
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| 3. Stephen Robinson ||[[Media:InstrumentationLecture.pdf|Instrumentation and Hardware]]
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| 4. Allison Nugent ||[[Media:MEG_Applications.pdf|Applications: What can I do with MEG?]]
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| 5. Allison Nugent ||[[Media:Tutorial1_DataEditorPreprocessing.pdf|Data Editor and command line Preprocessing]]
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| 6. Allison Nugent ||[[Media:Tutorial2_MRIHeadmodelPreprocessing.pdf|Placing fiducials, headmodel creation]]
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| 7. Tom Holroyd ||[[Media:Source_Localization.pdf|Synthetic Aperture Magnetometry Workflow]]
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| 8. Tom Holroyd || Voxel-wise power estimates: sam_cov, sam_wts, sam_3d, and sam_4d <br>(''Slides unavailable, but reach out to Tom for more information on this topic'')
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| 9. Fred Carver || [[Media:Tutorial5_SAMinducedpower.pdf|Induced power: sam_3dc]]
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| 10. Allison Nugent || [[Media:Tutorial6_Connectivity.pdf|Advanced (and potentially dangerous) topics]]
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* Singularity container with the CTF DataEditor tool and the SAMsrc MEG tools running under CentOS 6.9
: [https://megcore.nih.gov/MEG/megcore.img Singularity container megcore.img download]
* Text editors available within the container for editing shell scripts: vim, nano, gedit
: {| width=70% style="border: 1px solid black;"
|<u>Usage</u>: singularity shell --bind /data:/mnt/data megcore.img
▲|-
| where the ''/data'' file system holds your CTF data set and mounts under /mnt/data inside the container
|-
| (your /home directory and the /tmp file systems are automatically visible inside the container)
|}
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▲=====Course Material=====
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Revision as of 15:37, 8 December 2021
MEG Short Course Agenda and Handouts:
This course was held August 6 and 7, 2018 at NIH. The course files are archived below:
1. Fred Carver | MEG: The Basics |
2. Tom Holroyd | Introduction to Source Localization |
3. Stephen Robinson | Instrumentation and Hardware |
4. Allison Nugent | Applications: What can I do with MEG? |
5. Allison Nugent | Data Editor and command line Preprocessing |
6. Allison Nugent | Placing fiducials, headmodel creation |
7. Tom Holroyd | Synthetic Aperture Magnetometry Workflow |
8. Tom Holroyd | Voxel-wise power estimates: sam_cov, sam_wts, sam_3d, and sam_4d (Slides unavailable, but reach out to Tom for more information on this topic) |
9. Fred Carver | Induced power: sam_3dc |
10. Allison Nugent | Advanced (and potentially dangerous) topics |
Support tools
- Singularity container with the CTF DataEditor tool and the SAMsrc MEG tools running under CentOS 6.9
- Text editors available within the container for editing shell scripts: vim, nano, gedit
Usage: singularity shell --bind /data:/mnt/data megcore.img where the /data file system holds your CTF data set and mounts under /mnt/data inside the container (your /home directory and the /tmp file systems are automatically visible inside the container)