MNE biowulf

From MEG Core

Revision as of 15:49, 5 August 2021 by Jstout (talk | contribs) (Created page with "UNDER CONSTRUCTION ====Set up environment for processing==== Log into biowulf Start tmux session Start sinteractive or spersist w/tunnel flag: example: sinteractive --m...")

(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)

Jump to navigation Jump to search

UNDER CONSTRUCTION

Set up environment for processing

Log into biowulf Start tmux session Start sinteractive or spersist w/tunnel flag:

 example:   sinteractive --mem=8G --cpus-per-task=4 --gres=lscratch:5 --tunnel
 start another login to biowulf with the appropriate port forwarding (the instructions should be listed when sinteractive starts)

Load

Start the mne session

 module load singularity
 export SINGULARITY_BINDPATH="/data/$USER,/fdb,/scratch,/lscratch"
 singularity exec mne-python-jupyter_main.sif jupyter lab --port $PORT1

For admin setup

 # From the mne docker website -- https://github.com/mne-tools/mne-docker
 singularity pull docker://ghcr.io/mne-tools/mne-python-jupyter:main

Retrieved from "https://megcore.nih.gov/index.php?title=MNE_biowulf&oldid=4595"