MNE biowulf

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UNDER CONSTRUCTION

Set up environment for processing

Log into biowulf Start tmux session Start sinteractive or spersist w/tunnel flag:

 example:   sinteractive --mem=8G --cpus-per-task=4 --gres=lscratch:5 --tunnel
 start another login to biowulf with the appropriate port forwarding (the instructions should be listed when sinteractive starts)

Load

Start the mne session

 module load singularity
 export SINGULARITY_BINDPATH="/data/$USER,/fdb,/scratch,/lscratch"
 singularity exec mne-python-jupyter_main.sif jupyter lab --port $PORT1

For admin setup

 # From the mne docker website -- https://github.com/mne-tools/mne-docker
 singularity pull docker://ghcr.io/mne-tools/mne-python-jupyter:main

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