NIH MEG Short Course 2018: Difference between revisions

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Building 10 FAES Classroom 3: B1C207
Building 10 FAES Classroom 3: B1C207
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{| class = "wikitable"
|12:30 – 12:50 pm || Data Editor and command line Preprocessing <br/> Allison Nugent
|12:30 – 12:50 pm ||[[Media:Tutorial1_DataEditorPreprocessing.pdf|Data Editor and command line Preprocessing]] <br/> Allison Nugent
|-
|-
|12:50 – 1:30 pm || Placing fiducials, headmodel creation <br/> Allison Nugent
|12:50 – 1:30 pm ||[[Media:Tutorial2_MRIHeadmodelPreprocessing.pdf|Placing fiducials, headmodel creation]] <br/> Allison Nugent
|-
|-
|1:30 – 1:50 pm || Synthetic Aperture Magnetometry Workflow <br/> Tom Holroyd
|1:30 – 1:50 pm || Synthetic Aperture Magnetometry Workflow <br/> Tom Holroyd
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|1:50 – 2:00 pm || Break
|1:50 – 2:00 pm || Break
|-
|-
|2:00 – 2:30 pm || Voxel-wise power estimates: sam_cov, sam_wts, sam_3d, and sam_4d <br/> Tom Holroyd
|2:00 – 2:30 pm || Voxel-wise power estimates: sam_cov, sam_wts, sam_3d, and sam_4d <br/> Tom Holroyd
|-
|-
|2:30 – 3:00 pm || Induced power: sam_3dc <br/> Fred Carver
|2:30 – 3:00 pm || Induced power: sam_3dc <br/> Fred Carver
|-
|-
|3:00 – 3:30 pm || Advanced (and potentially dangerous) topics <br/> Allison Nugent
|3:00 – 3:30 pm || [[Media:Tutorial6_Connectivity.pdf|Advanced (and potentially dangerous) topics]] <br/> Allison Nugent
|-
|-
|}
|}

Revision as of 20:39, 7 August 2018

MEG Short Course Agenda and Handouts:

Monday, August 6th

Building 10 FAES Classroom 3: B1C207

12:30 – 1:10 pm MEG: The Basics
Fred Carver
1:10 – 1:50 pm Introduction to Source Localization
Tom Holroyd
1:50 – 2:00 pm Break
2:00 – 2:40 pm Instrumentation and Hardware
Stephen Robinson
2:40 – 3:20 pm Applications: What can I do with MEG?
Allison Nugent
3:20 – 3:30 pm Final Questions
Tuesday, August 7th

Building 10 FAES Classroom 3: B1C207

12:30 – 12:50 pm Data Editor and command line Preprocessing
Allison Nugent
12:50 – 1:30 pm Placing fiducials, headmodel creation
Allison Nugent
1:30 – 1:50 pm Synthetic Aperture Magnetometry Workflow
Tom Holroyd
1:50 – 2:00 pm Break
2:00 – 2:30 pm Voxel-wise power estimates: sam_cov, sam_wts, sam_3d, and sam_4d
Tom Holroyd
2:30 – 3:00 pm Induced power: sam_3dc
Fred Carver
3:00 – 3:30 pm Advanced (and potentially dangerous) topics
Allison Nugent
Support tools for the hands-on training sessions
  • Singularity container with the CTF DataEditor tool and the SAMsrc MEG tools running under CentOS 6.9
Singularity container megcore.img download
  • Text editors available within the container for editing shell scripts: vim, nano, gedit
Usage: singularity shell --bind /data:/mnt/data megcore.img
where the /data file system holds your CTF data set and mounts under /mnt/data inside the container
(your /home directory and the /tmp file systems are automatically visible inside the container)
  • Working on the NIH HPC systems
Data will be available in /data/classes/meg, along with all necessary scripts
Modules are now available for SAM (samsrcv3) and CTF (ctf).
To begin:
Log in to the student account (NN is 1--30):
$ ssh -Y studentNN@felix.nimh.nih.gov
Once logged in, access the course materials with:
$ source init_course.sh
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