NIH MEG Short Course 2018: Difference between revisions
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=====Support tools |
=====Support tools===== |
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* Singularity container with the CTF DataEditor tool and the SAMsrc MEG tools running under CentOS 6.9 |
* Singularity container with the CTF DataEditor tool and the SAMsrc MEG tools running under CentOS 6.9 |
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: [https://megcore.nih.gov/MEG/megcore.img Singularity container megcore.img download] |
: [https://megcore.nih.gov/MEG/megcore.img Singularity container megcore.img download] |
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| (your /home directory and the /tmp file systems are automatically visible inside the container) |
| (your /home directory and the /tmp file systems are automatically visible inside the container) |
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* Working on the NIH HPC systems |
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: Data are still available in /data/classes/meg, along with all necessary scripts |
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: Modules are now available for SAM (samsrcv3) and CTF (ctf). |
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: To begin: |
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: {| width=70% style="border: 1px solid black;" |
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| Copy the data from /data/classes/meg |
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| Use the initialization script to configure your environment: |
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| $ . init_course.sh |
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Revision as of 14:36, 8 December 2021
MEG Short Course Agenda and Handouts:
This course was held August 6 and 7, 2018 at NIH. The course files are archived below:
| 1. Fred Carver | MEG: The Basics |
| 2. Tom Holroyd | Introduction to Source Localization |
| 3. Stephen Robinson | Instrumentation and Hardware |
| 4. Allison Nugent | Applications: What can I do with MEG? |
| 5. Allison Nugent | Data Editor and command line Preprocessing |
| 6. Allison Nugent | Placing fiducials, headmodel creation |
| 7. Tom Holroyd | Synthetic Aperture Magnetometry Workflow |
| 8. Tom Holroyd | Voxel-wise power estimates: sam_cov, sam_wts, sam_3d, and sam_4d (Slides unavailable, but reach out to Tom for more information on this topic) |
| 9. Fred Carver | Induced power: sam_3dc |
| 10. Allison Nugent | Advanced (and potentially dangerous) topics |
Support tools
- Singularity container with the CTF DataEditor tool and the SAMsrc MEG tools running under CentOS 6.9
- Text editors available within the container for editing shell scripts: vim, nano, gedit
Usage: singularity shell --bind /data:/mnt/data megcore.img where the /data file system holds your CTF data set and mounts under /mnt/data inside the container (your /home directory and the /tmp file systems are automatically visible inside the container)