Suggested Pipelines: Difference between revisions
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== Basic Synthetic Aperture Magnetometry Workflow ==
{{#mermain:graph LR
subgraph MRI Preprocessing▼
hull --> ortho["Processed MRI"];
end▼
}}
{{#mermaid:graph LR
marks --> Covariance;
▲subgraph MRI Preprocessing
▲ MRI["Structural MRI"] --> ortho["Processed MRI"];
subgraph MEG Preprocessing▼
ThresholdDetect --> filter[Basic Filtering];▼
filter --> meg;
end
Line 16 ⟶ 27:
meg[MEG Data] --> Filter[Band-pass<br>filter];
Filter --> Covariance;
▲end
▲subgraph MEG Preprocessing
▲ ThresholdDetect --> filter[Basic Filtering];
▲ filter --> marks[Create markers];
end
Line 26 ⟶ 32:
{{#mermaid:graph LR
subgraph
Markers --> Beamformer;
Covariance --> Beamformer;
ortho[Processed MRI] --> Beamformer;
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Revision as of 12:17, 2 March 2019
Basic Synthetic Aperture Magnetometry Workflow
{{#mermain:graph LR subgraph MRI Preprocessing
MRI["Structural MRI"] --> hull(process with orthohull); hull --> ortho["Processed MRI"];
end }}
- Create covariance matrices using sam_cov.
- Compute beamformer weights with sam_wts.
- sam_3d uses the weights to compute volumetric images of activity estimates.
- View them with AFNI.
- It didn't work, go back and try again.
- Nope, still didn't work, try this instead.