Suggested Pipelines: Difference between revisions

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Line 12:
hull --> ortho["Processed MRI"];
 
style hull fill:#fcf,stroke:#333,stroke-width:1px
click hull "https://megcore.nih.gov/index.php/Head_Localization_and_MRI_Coregistration" "orthohull documentation"
end
Line 27:
 
subgraph MEG Preprocessing
ThresholdDetectraw[Raw MEG data] --> filter[Basic Filtering];
adc[Raw ADC data] --> ThresholdDetect;
filterThresholdDetect --> marks[Create Markers];
filter --> meg;
end
Line 56 ⟶ 57:
AFNI --> sam_cov;
 
style sam_cov fill:#fcf,stroke:#333,stroke-width:1px
click sam_cov "https://megcore.nih.gov/index.php/Sam_cov" "sam documentation"
style sam_wts fill:#fcf,stroke:#333,stroke-width:1px
click sam_wts "https://megcore.nih.gov/index.php/Sam_wts" "sam documentation"
style sam_3d fill:#fcf,stroke:#333,stroke-width:1px
click sam_3d "https://megcore.nih.gov/index.php/Sam_3d" "sam documentation"
style AFNI fill:#fcf,stroke:#333,stroke-width:1px
click AFNI "https://afni.nimh.nih.gov/" "The AFNI website"
end

Revision as of 13:03, 2 March 2019

Basic Synthetic Aperture Magnetometry Workflow

  1. Create covariance matrices using sam_cov.
  2. Compute beamformer weights with sam_wts.
  3. sam_3d uses the weights to compute volumetric images of activity estimates.
  4. View them with AFNI.
  5. It didn't work, go back and try again.
  6. Nope, still didn't work, try this instead.
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