Meg information based connectivity coding session: Difference between revisions
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There will be a quick discussion/demo (10-20mins) and some example data on biowulf. <br> |
There will be a quick discussion/demo (10-20mins) and some example data on biowulf. <br> |
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FRITES toolbox |
==FRITES toolbox== |
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[https://megcore.nih.gov/MEG/FRITES_Tutorial_07132022.mp4 Club MEG Presentation Recording] |
[https://megcore.nih.gov/MEG/FRITES_Tutorial_07132022.mp4 Club MEG Presentation Recording] |
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[https://brainets.github.io/frites/ Background] |
[https://brainets.github.io/frites/ Background] |
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[https://brainets.github.io/frites/auto_examples/index.html Example Scripts] |
[https://brainets.github.io/frites/auto_examples/index.html Example Scripts] |
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Install in new environment (RECOMMENDED!): |
===Install in new environment (RECOMMENDED!):=== |
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conda create -n frites conda-forge::mne conda-forge::jupyterlab pip -y |
conda create -n frites conda-forge::mne conda-forge::jupyterlab pip -y |
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conda activate frites |
conda activate frites |
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#Once jupyter is open, the notebooks are in the notebooks folder |
#Once jupyter is open, the notebooks are in the notebooks folder |
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Install in current environment (Better to use New environment as listed above!)- |
===Install in current environment (Better to use New environment as listed above!)-=== |
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#Download getting started tutorials |
#Download getting started tutorials |
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git clone https://github.com/brainets/CookingFrites.git |
git clone https://github.com/brainets/CookingFrites.git |
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SAM Information Based Connectivity - (tutorial will be formalized by Friday) |
==SAM Information Based Connectivity - (tutorial will be formalized by Friday)== |
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[https://megcore.nih.gov/MEG/Robinson_InformationTheoryMEG_ClubMEG_03102022.mp4 Club MEG Presentation Recording] |
[https://megcore.nih.gov/MEG/Robinson_InformationTheoryMEG_ClubMEG_03102022.mp4 Club MEG Presentation Recording] |
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Revision as of 13:53, 9 August 2022
!Under Construction - will be finalized by Friday!
We will be meeting virtually over Zoom from 1pm-3pm with breakout rooms for questions and collaboration
There will be a quick discussion/demo (10-20mins) and some example data on biowulf.
FRITES toolbox
Club MEG Presentation Recording Background Getting Started Scripts Example Scripts
Install in new environment (RECOMMENDED!):
conda create -n frites conda-forge::mne conda-forge::jupyterlab pip -y conda activate frites pip install frites
git clone https://github.com/brainets/CookingFrites.git cd CookingFrites jupyter lab #Once jupyter is open, the notebooks are in the notebooks folder
Install in current environment (Better to use New environment as listed above!)-
#Download getting started tutorials git clone https://github.com/brainets/CookingFrites.git pip install frites