AnalysisGuidelines
Data collection: Exact timing of the experiment can be provided in the data acquisition or a set of smaller trials can be provided
CTF Software: DataEditor -data $DATA
thresholdDetect - Detect changes in the analog inputs to determine onset of stimulus addmarkers - necessary to embed the stimulus timing into the CTF dataset
parsemarks - Combines markers (i.e optical and
newDs -f -filter processing.cfg
Anatomy Processing:
The MRI processing starts with anat+orig.BRIK and anat+orig.HEAD format. The datasets are opened using AFNI
fiddist.py fiddist2.py - wrapper that accepts two inputs and provides the difference in distance (e.g. MRI and dataset)