Suggested Pipelines

Basic Synthetic Aperture Magnetometry Workflow

{{#mermain:graph LR subgraph MRI Preprocessing

 MRI["Structural MRI"] --> hull(process with orthohull);
 hull --> ortho["Processed MRI"];

end }}

1. Create covariance matrices using sam_cov.
2. Compute beamformer weights with sam_wts.
3. sam_3d uses the weights to compute volumetric images of activity estimates.
4. View them with AFNI.
5. It didn't work, go back and try again.
6. Nope, still didn't work, try this instead.