Meg information based connectivity coding session

!Under Construction - will be finalized by Friday!

We will be meeting virtually over Zoom from 1pm-3pm with breakout rooms for questions and collaboration
There will be a quick discussion/demo (10-20mins) and some example data on biowulf.

FRITES toolbox

Club MEG Presentation Recording

 Background
 Getting Started Scripts
 Example Scripts

Install in new environment (RECOMMENDED!):

 conda create -n frites conda-forge::mne conda-forge::jupyterlab pip -y 
 conda activate frites
 pip install frites

 git clone https://github.com/brainets/CookingFrites.git
 cd CookingFrites
 jupyter lab
 #Once jupyter is open, the notebooks are in the notebooks folder

Install in current environment (Better to use New environment as listed above!)-

 #Download getting started tutorials
 git clone https://github.com/brainets/CookingFrites.git
 pip install frites

SAM Information Based Connectivity - (tutorial will be formalized by Friday)

Club MEG SAM Connectivity Presentation Recording

 #Log into biowulf
 sinteractive --mem=6G --cpus-per-task=4
 #Make sure modules are loadable -- this can also be added to ~/.bashrc file
 module use --append /data/MEGmodules/modulefiles
 module load SAMsrcDEV

 #This part is already done
 sam_cov ...
 sam_wts ...
 STEdelay ....  

cp ***TESTDATA*** (fix this part) Local folder