Configuring analysis machine

Under Construction

Installing SAMsrc

 #Install gsl
 #Fedora
 sudo dnf install nifticlib-devel
 sudo dnf install gifticlib-devel
 sudo dnf install motif motif-devel
 sudo dnf install fftw fftw-devel
 sudo dnf install libpng12.x86_64
 sudo dnf install -y tcsh libXp op  ## Not sure of the op
 sudo dnf install gsl, gsl-devel    ## If errors when running SAM software, you may need to link the library

Installing Afni

https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/background_install/install_instructs/index.html

Installing CTF software

To view and process the data using the native ctf software, the packages have been incorporated into a singularity container
Install singularity on your computer

 #Fedora Linux
 sudo dnf install singularity

 #Redhat/Centos Linux
 sudo yum install singularity

 #Ubuntu/Debian Linux 
 sudo apt-get install singularity-container

Download the current CTF singularity container and components

• ctf.sif
• wrap
• mkwrappers

 cd $Directory_With_CTF_Container
 mkwrappers  #This will install the container in /usr/local/ctf/bin and the links to all of the functions in /usr/local/ctf/bin

Link the ctf commands