Analysis with Nipype: Difference between revisions
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# Resting State |
# Resting State |
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SAM input base class used for all of the SAM functions |
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Configuration on Biowulf: |
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# Set up conda: instructions on NIH HPC - https://hpc.nih.gov/apps/python.html |
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# Activate the conda environment and install nipype |
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#If you do not know your environment name type: conda env list |
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conda activate $ENVIRONMENT_NAME |
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conda install -c nipype conda-forge |
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Revision as of 19:10, 30 October 2019
Nipype is a pipeline configuration tool that controls analysis flow and easily reconfigures for added functionality
Nipype has strict requirements on inputs and outputs
- InputSpec
- OutputSpec
Preconfigured pipeline templates:
- Epilepsy
- Sam_epi
- Task
- Parsemarks, addmarks, samcov, sam3d, ... stats?
- Resting State
SAM input base class used for all of the SAM functions
Configuration on Biowulf:
- Set up conda: instructions on NIH HPC - https://hpc.nih.gov/apps/python.html
- Activate the conda environment and install nipype
#If you do not know your environment name type: conda env list conda activate $ENVIRONMENT_NAME conda install -c nipype conda-forge