Difference between revisions of "Suggested Pipelines"

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Line 12: Line 12:
{{#mermaid:graph LR
{{#mermaid:graph LR
subgraph MRI Preprocessing
subgraph MRI Preprocessing
MRI["Structural MRI"] --> hull(process with orthohull);
MRI["Structural MRI"] --> fids["Place Fiducial"];
MRI["Structural MRI"] --> shape["Register point clouds"];
fids --> hull["Process with orthohull"];
shape --> hull;
hull --> ortho["Processed MRI"];
hull --> ortho["Processed MRI"];

style hull fill:#fcf
style hull fill:#fcf
click hull "https://megcore.nih.gov/index.php/Head_Localization_and_MRI_Coregistration" "orthohull documentation"
click hull "https://megcore.nih.gov/index.php/Head_Localization_and_MRI_Coregistration" "orthohull documentation"

Revision as of 15:33, 19 March 2019

Master Pipeline

Basic Synthetic Aperture Magnetometry Workflow

  1. Create covariance matrices using sam_cov.
  2. Compute beamformer weights with sam_wts.
  3. sam_3d uses the weights to compute volumetric images of activity estimates.
  4. View them with AFNI.
  5. It didn't work, go back and try again.
  6. Nope, still didn't work, try this instead.