Difference between revisions of "Suggested Pipelines"

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style hull fill:#fcf,stroke:#333,stroke-width:1px
style hull fill:#fcf,stroke:#333,stroke-width:1px
click hull "https://megcore.nih.gov/index.php/Head_Localization_and_MRI_Coregistration" "orthohull documentation"
click hull "https://megcore.nih.gov/index.php/Head_Localization_and_MRI_Coregistration" "orthohull documentation"
end

subgraph Head Model
ortho --> MultiSphere;
ortho --> Nolte;
end
end
}}
}}
Line 38: Line 43:
Markers --> Beamformer;
Markers --> Beamformer;
Covariance --> Beamformer;
Covariance --> Beamformer;
ortho[Processed MRI] --> Beamformer;
head[Head Model] --> Beamformer;
Beamformer --> image["3D Images"];
Beamformer --> image["3D Images"];
end
end
Line 52: Line 57:


style sam_cov fill:#fcf,stroke:#333,stroke-width:1px
style sam_cov fill:#fcf,stroke:#333,stroke-width:1px
click sam_cov "https://megcore.nih.gov/index.php/Sam_cov" "sam_cov documentation"
click sam_cov "https://megcore.nih.gov/index.php/Sam_cov" "sam documentation"
style sam_wts fill:#fcf,stroke:#333,stroke-width:1px
click sam_wts "https://megcore.nih.gov/index.php/Sam_wts" "sam documentation"
style sam_3d fill:#fcf,stroke:#333,stroke-width:1px
click sam_3d "https://megcore.nih.gov/index.php/Sam_3d" "sam documentation"
style AFNI fill:#fcf,stroke:#333,stroke-width:1px
style AFNI fill:#fcf,stroke:#333,stroke-width:1px
click AFNI "https://afni.nimh.nih.gov/" "The AFNI website"
click AFNI "https://afni.nimh.nih.gov/" "The AFNI website"

Revision as of 12:43, 2 March 2019

Basic Synthetic Aperture Magnetometry Workflow

  1. Create covariance matrices using sam_cov.
  2. Compute beamformer weights with sam_wts.
  3. sam_3d uses the weights to compute volumetric images of activity estimates.
  4. View them with AFNI.
  5. It didn't work, go back and try again.
  6. Nope, still didn't work, try this instead.