Difference between revisions of "Suggested Pipelines"

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Line 11: Line 11:
MRI["Structural MRI"] --> hull(process with orthohull);
MRI["Structural MRI"] --> hull(process with orthohull);
hull --> ortho["Processed MRI"];
hull --> ortho["Processed MRI"];

style hull fill:#fcf,stroke:#333,stroke-width:1px
style hull fill:#fcf,stroke:#333,stroke-width:1px
click hull "https://megcore.nih.gov/index.php/Head_Localization_and_MRI_Coregistration" "orthohull documentation"
end
end
}}
}}
Line 49: Line 51:
AFNI --> sam_cov;
AFNI --> sam_cov;


style sam_cov fill:#fcf,stroke:#333,stroke-width:1px
click sam_cov "https://megcore.nih.gov/index.php/Sam_cov" "sam_cov documentation"
click sam_cov "https://megcore.nih.gov/index.php/Sam_cov" "sam_cov documentation"
style AFNI fill:#fcf,stroke:#333,stroke-width:1px
click AFNI "https://afni.nih.gov/" "The AFNI website"
click AFNI "https://afni.nih.gov/" "The AFNI website"
end
end

Revision as of 12:35, 2 March 2019

Basic Synthetic Aperture Magnetometry Workflow

  1. Create covariance matrices using sam_cov.
  2. Compute beamformer weights with sam_wts.
  3. sam_3d uses the weights to compute volumetric images of activity estimates.
  4. View them with AFNI.
  5. It didn't work, go back and try again.
  6. Nope, still didn't work, try this instead.