Meg information based connectivity coding session
!Under Construction - will be finalized by Friday!
We will be meeting virtually over Zoom from 1pm-3pm with breakout rooms for questions and collaboration
There will be a quick discussion/demo (10-20mins) and some example data on biowulf.
FRITES toolbox
Club MEG Presentation Recording
Background Getting Started Scripts Example Scripts
Install in new environment (RECOMMENDED!):
conda create -n frites conda-forge::mne conda-forge::jupyterlab pip -y conda activate frites pip install frites
git clone https://github.com/brainets/CookingFrites.git cd CookingFrites jupyter lab #Once jupyter is open, the notebooks are in the notebooks folder
Install in current environment (Better to use New environment as listed above!)-
#Download getting started tutorials git clone https://github.com/brainets/CookingFrites.git pip install frites
SAM Information Based Connectivity - (tutorial will be formalized by Friday)
Club MEG SAM Connectivity Presentation Recording
#Log into biowulf sinteractive --mem=6G --cpus-per-task=4 #Make sure modules are loadable -- this can also be added to ~/.bashrc file module use --append /data/MEGmodules/modulefiles module load SAMsrcDEV
#This part is already done sam_cov ... sam_wts ... STEdelay ....
cp ***TESTDATA*** (fix this part) Local folder