MNE Python Tutorial 2021: Difference between revisions

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IF YOU DO NOT HAVE MINICONDA/ANACONDA INSTALLED - have IT install miniconda under your user account
IF YOU DO NOT HAVE MINICONDA/ANACONDA INSTALLED - have IT install miniconda under your user account
conda install mamba -y
conda install -n base mamba -c conda-forge -y
conda create -n mne
conda create -n mne
conda activate mne
conda activate mne
mamba install -c conda-forge mne -y
mamba install -c conda-forge mne -y
mamba install jupyter pip -y
mamba install jupyter pip -y

# For a faster install of the


=Download the sample data=
=Download the sample data=

Revision as of 11:39, 24 September 2021

Steps to prepare prior to tutorial

Prepare python environment

 IF YOU DO NOT HAVE MINICONDA/ANACONDA INSTALLED -  have IT install miniconda under your user account
 
 conda install -n base mamba -c conda-forge -y   
 conda create -n mne
 conda activate mne
 mamba install -c conda-forge mne -y
 mamba install jupyter pip -y
 # For a faster install of the 

Download the sample data

 scp <USERNAME>@helix.nih.gov:/data/NIMH_scratch/mne_tutorial/mne_tutorial.tar.gz <NEW PATH>
 cd <NEW PATH>
 tar -xvf mne_tutorial.tar.gz

Start Jupyter Notebook

 cd <NEW PATH>/nimh_tutorial_data
 jupyter notebook mne_tutorial_10_01_21.ipynb