Difference between revisions of "MNE Python Tutorial 2021"

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(Initial)
 
m (Instructions for download)
Line 7: Line 7:
 
conda activate mne
 
conda activate mne
 
mamba install -c conda-forge mne -y
 
mamba install -c conda-forge mne -y
mamba install jupyter pip
+
mamba install jupyter pip -y
  +
  +
=Download the sample data=
  +
scp <USERNAME>@helix.nih.gov:/data/NIMH_scratch/stoutjd/nimh_tutorial_data.tar.gz <NEW PATH>
  +
cd <NEW PATH>
  +
tar -xvf nimh_tutorial_data.tar.gz
  +
  +
=Start Jupyter Notebook=
  +
cd <NEW PATH>/nimh_tutorial_data
  +
jupyter notebook mne_tutorial_10_01_21.ipynb

Revision as of 16:07, 23 September 2021

Steps to prepare prior to tutorial

Prepare python environment

 IF YOU DO NOT HAVE MINICONDA/ANACONDA INSTALLED -  have IT install miniconda under your user account
 
 conda install mamba -y
 conda create -n mne
 conda activate mne
 mamba install -c conda-forge mne -y
 mamba install jupyter pip -y

Download the sample data

 scp <USERNAME>@helix.nih.gov:/data/NIMH_scratch/stoutjd/nimh_tutorial_data.tar.gz <NEW PATH>
 cd <NEW PATH>
 tar -xvf nimh_tutorial_data.tar.gz 

Start Jupyter Notebook

 cd <NEW PATH>/nimh_tutorial_data
 jupyter notebook mne_tutorial_10_01_21.ipynb