Difference between revisions of "MNE Python Tutorial 2021"

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Line 9: Line 9:
  
 
=Download the sample data=
 
=Download the sample data=
 +
### NIMH Users: Download here ###
 
   scp <USERNAME>@helix.nih.gov:/data/NIMH_scratch/mne_tutorial/mne_tutorial.tar.gz <NEW PATH>
 
   scp <USERNAME>@helix.nih.gov:/data/NIMH_scratch/mne_tutorial/mne_tutorial.tar.gz <NEW PATH>
 
   cd <NEW PATH>
 
   cd <NEW PATH>
 
   tar -xvf mne_tutorial.tar.gz
 
   tar -xvf mne_tutorial.tar.gz
 +
 +
### NON-NIH MEG Users: Download from tako ###
 +
  The data is located on the MEG data server and is accessible by all users with accounts
 +
  An email will be sent with the path to the data
  
 
=Start Jupyter Notebook=
 
=Start Jupyter Notebook=
 
   cd <NEW PATH>/nimh_tutorial_data
 
   cd <NEW PATH>/nimh_tutorial_data
 
   jupyter notebook mne_tutorial_10_01_21.ipynb
 
   jupyter notebook mne_tutorial_10_01_21.ipynb

Revision as of 12:26, 24 September 2021

Steps to prepare prior to tutorial

Prepare python environment

 IF YOU DO NOT HAVE MINICONDA/ANACONDA INSTALLED -  have IT install miniconda under your user account
 
 conda install -n base mamba -c conda-forge -y  
 mamba create -n mne conda-forge::mne main::pip main:jupyter -y
 conda activate mne

Download the sample data

      1. NIMH Users: Download here ###
 scp <USERNAME>@helix.nih.gov:/data/NIMH_scratch/mne_tutorial/mne_tutorial.tar.gz <NEW PATH>
 cd <NEW PATH>
 tar -xvf mne_tutorial.tar.gz
      1. NON-NIH MEG Users: Download from tako ###
 The data is located on the MEG data server and is accessible by all users with accounts
 An email will be sent with the path to the data

Start Jupyter Notebook

 cd <NEW PATH>/nimh_tutorial_data
 jupyter notebook mne_tutorial_10_01_21.ipynb