Difference between revisions of "MNE Python Tutorial 2021"

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m (Instructions for download)
Line 10: Line 10:
  
 
=Download the sample data=
 
=Download the sample data=
   scp <USERNAME>@helix.nih.gov:/data/NIMH_scratch/stoutjd/nimh_tutorial_data.tar.gz <NEW PATH>
+
   scp <USERNAME>@helix.nih.gov:/data/NIMH_scratch/mne_tutorial/mne_tutorial.tar.gz <NEW PATH>
 
   cd <NEW PATH>
 
   cd <NEW PATH>
   tar -xvf nimh_tutorial_data.tar.gz  
+
   tar -xvf mne_tutorial.tar.gz
  
 
=Start Jupyter Notebook=
 
=Start Jupyter Notebook=
 
   cd <NEW PATH>/nimh_tutorial_data
 
   cd <NEW PATH>/nimh_tutorial_data
 
   jupyter notebook mne_tutorial_10_01_21.ipynb
 
   jupyter notebook mne_tutorial_10_01_21.ipynb

Revision as of 16:36, 23 September 2021

Steps to prepare prior to tutorial

Prepare python environment

 IF YOU DO NOT HAVE MINICONDA/ANACONDA INSTALLED -  have IT install miniconda under your user account
 
 conda install mamba -y
 conda create -n mne
 conda activate mne
 mamba install -c conda-forge mne -y
 mamba install jupyter pip -y

Download the sample data

 scp <USERNAME>@helix.nih.gov:/data/NIMH_scratch/mne_tutorial/mne_tutorial.tar.gz <NEW PATH>
 cd <NEW PATH>
 tar -xvf mne_tutorial.tar.gz

Start Jupyter Notebook

 cd <NEW PATH>/nimh_tutorial_data
 jupyter notebook mne_tutorial_10_01_21.ipynb