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Club MEG is our version of a journal club. We welcome NIH MEG researchers to lead discussions on any MEG topic, including interesting papers, experiment ideas, analysis techniques, or finding from your research.
Club MEG is our version of a journal club.


Interested in presenting a topic? Email '''Fred Carver at carverf@nih.gov''' or '''Jeff Stout at stoutjd@nih.gov''' if you would like to present.
We welcome NIH MEG researchers to lead discussions on any MEG topic, including interesting papers, experiment ideas, analysis techniques, or finding from your research.


Notifications of upcoming talks are sent to the [https://list.nih.gov/cgi-bin/wa.exe?A0=meg_announce MEG_ANNOUNCE (NIH MEG Core Users only)] and [https://list.nih.gov/cgi-bin/wa.exe?SUBED1=CLUB-MEG_ANNOUNCE&A=1 Club-MEG_ANNOUNCE] listservs.
Please email Fred Carver at carverf@nih.gov if you would like to present.


Notifications of upcoming talks are sent to the [https://list.nih.gov/cgi-bin/wa.exe?A0=meg_announce MEG_ANNOUNCE] listserv.


== Upcoming Talks/Discussions ==
Recently, two members of our staff, Angela Wang and Tom Holroyd, led a discussion on neurofeedback. Here are the slides: [[Media:Neurofeedback_Review.pdf|neurofeedback review]]; [[Media:RT-MEG.pdf|real-time beamforming]].
* '''04/19/2024 at 1:00pm''' 2X Journal Article
** Shruti
** Ryan
*** [https://www.biorxiv.org/content/10.1101/2023.06.23.546249v2.full.pdf An adversarial collaboration to critically evaluate theories of consciousness ]
* '''05/**/2024 at 1:00pm''' 2X Journal Article
** Lucrezia
** Anna
* '''05/--/2024''' Possibly DC Brainhack
* '''06/**/2024''' Check with Jess and Sebastian


</br>
Jeff's talk:
Other notable dates:</br>
[[File:Unnamed.jpg|thumb]]
<!-- Note to self: Don't schedule during these times: -->
'''OHBM:''' 06/(23 - 27)/2024 </br>
'''BIOMAG''' 08/(26 – 29)/2024 </br>

== Recent Talks/Discussions ==
* '''03/08/2024 at 1:00pm''' 2X Journal Article
** Shivam Bansal
*** [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10902297/pdf/42003_2024_Article_5927.pdf Linking structural and functional changes during aging using multilayer brain network analysis ]
** Amaia Benitez Andonegui
*** [https://www.pnas.org/doi/full/10.1073/pnas.1508523113 Brain responses in humans reveal ideal observer-like sensitivity to complex acoustic patterns]
* '''02/23/2024''' Yoojin Lee - Dysregulated connectivity among insula, postcentral gyrus, and precuneus and its association with suicide risk
* '''02/16/2024''' 2X Journal Article
** Fred Carver
*** [https://www.biomedcentral.com/epdf/10.1186/s12984-015-0076-7?sharing_token=mkccASrrnNz9b8w0BMAJ82_BpE1tBhCbnbw3BuzI2RNVoDKPinmyo4Rqp7Gjl8B4zqtKDO-MMrgZh-FgW06gwuL_Dl39uXBVRbbC4vqoHXQJBKV6_KXny6x6KAlhDvqL4tZzdevxq1WLF85j0Mafb7m5Aoq0vs43lwARUHXqlYA%3D MEG-based neurofeedback for hand rehabilitation ]
** Jeff Stout
*** [https://www.sciencedirect.com/science/article/pii/S105381192200492X The natural frequencies of the resting human brain ]
* '''01/26/2024''' Megan Parker - A smartphone delivered attention retraining intervention for altering neural underpinnings of food attention bias in adolescent girls with overweight or obesity
* '''11/08/2023-11/09/2023''' MEG North America (at NIH campus) - https://megcore.nih.gov/index.php/MEG_North_America_Workshop
* '''10/20/2023''' Club MEG: (Multi-Presenter: 3x 15min talks)
** Elena Hayday
*** [https://www.sciencedirect.com/science/article/pii/S138824572300737X?casa_token=lP2ya9xhlBQAAAAA:7vx20m6eqPwKvc90PtswFxeZaVrYEklGAMg46guMAzy5fb_uDtMkA-HhcZAftdmFI6I2wQ Language MEG predicts postoperative verbal memory change in left mesial temporal lobe epilepsy]
** Pei Robins
*** [https://www.jneurosci.org/content/jneuro/42/47/8807.full.pdf Whole-Brain Propagation Delays in Multiple Sclerosis, a Combined Tractography-Magnetoencephalography Study]
** Amy Xu
*** [https://www.sciencedirect.com/science/article/pii/S0165032722011405?via%3Dihub Convergent and divergent cognitive impairment of unipolar and bipolar depression: A magnetoencephalography resting-state study]
* '''09/27(Wednesday) & 10/04/2023(Wednesday)'''
** [https://megcore.nih.gov/index.php/MEG_training_course_2023 MEG Training Course]
** [https://github.com/nih-megcore/MEG_workshop_2023 Code: Course Github Page]
* '''08/18/2023''' Arshitha Basavaraj and Jeff Stout - Curating / Uploading / Editing / Versioning MEG BIDS data for OpenNeuro
* '''08/04/2023''' Sue Tong and Daniel Eisenberg - Schizophrenia, antipsychotic treatment, and cortical function
* '''07/28/2023''' Riley Hochstein - Magnetocardiography with OPMs
* '''06/30/2023''' Club MEG: (Multi-Presenter: 3x 15min talks)
**Sebastian Montesinos
***[https://elifesciences.org/articles/33904 Differential temporal dynamics during visual imagery and perception]
**Miguel Jaime
***[https://molecularautism.biomedcentral.com/articles/10.1186/s13229-022-00498-2 Globally elevated excitation–inhibition ratio in children with autism spectrum disorder and below-average intelligence]
**Bess Bloomer
***[https://www.sciencedirect.com/science/article/pii/S2213158223000530 Functional connectivity changes during working memory in autism spectrum disorder: A two-year longitudinal MEG study]
* '''05/19/2023''' Club MEG: (Multi-Presenter: 3X 15min talks)
**Angela Wang
***[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7342265/ Localization of Early-Stage Visual Processing Deficits at Schizophrenia Spectrum Illness Onset Using Magnetoencephalography ]
**Price Withers
***[https://www.sciencedirect.com/science/article/pii/S1053811921002007?via%3Dihub Dynamic analysis on simultaneous iEEG-MEG data via hidden Markov model]
**Kaya Scheman
***[https://www.sciencedirect.com/science/article/pii/S138824571830261X Advanced dynamic statistical parametric mapping with MEG in localizing epileptogenicity of the bottom of sulcus dysplasia]
* '''05/12/2023''' Christian Brodbeck (University of Connecticut) - Eelbrain Software Demonstration (for neurophysiological statistics)
**https://eelbrain.readthedocs.io/en/r-0.27/index.html
* '''05/05/2023''' -- [https://megcore.nih.gov/index.php/MEG_Hackathon_2023 '''MEG Hackathon 2023''']
** [https://github.com/nih-megcore/MEGHACK_2023_spring GitHub_Repos]
* '''04/28/2023 at 1:00pm''' Club MEG: Abbas Babajani-Feremi - (University of Florida) - ''MEG Presurgical Language Mapping Using a Novel Automatic Equivalent Current Dipole Algorithm (AsECDa) in Comparison with MNE, dSPM, and DICS Beamformer''
**[https://megcore.nih.gov/MEG/AbbasBabajani-Feremi_ClubMEG_04282023.mp4 Recording Download (mp4)]
* '''04/21/2023 at 1:00pm''' Hackathon Prep -- Go over ideas and best practices - setup git repos for the project.
**[https://megcore.nih.gov/index.php/MEG_Hackathon_2023 MEG Hackathon 2023 -- SIGN UP!]
* '''03/03/2023''' Graham Flick (New York University) - ''Visual word recognition in natural reading: A co-registered MEG and eye-tracking study''
* '''02/24/2023''' Georgios Michalareas (Max Planck Institute) - [https://www.sciencedirect.com/science/article/pii/S0896627315011204?via%3Dihub Alpha-Beta and Gamma Rhythms Subserve Feedback and Feedforward Influences among Human Visual Cortical Areas]
* '''02/03/2023''' Lina Teichman and Amaia Benitez Andonegui - The temporal evolution of colour-space geometries in the human brain
* '''01/27/2023''' Lucrezia Liuzzi - Identifying markers of cognitive control
* '''12/09/2022''' Ryan Oakeson and Amaia Benitez, [https://www.biorxiv.org/content/10.1101/2022.05.31.494173v3 Top-down information flow drives lexical access when listening to continuous speech]
* '''12/02/2022''' Anna Namyst, [https://www.frontiersin.org/articles/10.3389/fpsyg.2016.00995/full Establishing New Mappings between Familiar Phones: Neural and Behavioral Evidence for Early Automatic Processing of Nonnative Contrasts]
* '''10/28/2022''' - Sharif Kronemer - "The neural mechanisms of afterimages: A model of illusory conscious perception"
**[https://megcore.nih.gov/MEG/SharifKronemer_ClubMEG_10282022.mp4 Recording Download (mp4)]
* '''10/07/2022''' - Sarah Grewal - [https://pubs.rsna.org/doi/10.1148/radiol.212453 On-Scalp Optically Pumped Magnetometers versus Cryogenic Magnetoencephalography for Diagnostic Evaluation of Epilepsy in School-aged Children (Journal Article)]
**[https://megcore.nih.gov/MEG/SarahGrewal_ClubMEG_10072022.mp4 Recording Download (mp4)]
* '''09/16/2022''' Lindsay Oberman - Autism background, MEG autism biomarkers, interventional approach, and preliminary study results
**[https://megcore.nih.gov/MEG/Oberman_ClubMEG_09162022.mp4 Recording Download (mp4)]
** [https://pubmed.ncbi.nlm.nih.gov/25745372/ Prospective MEG biomarkers in ASD: pre-clinical evidence and clinical promise of electrophysiological signatures]
* '''09/15/2022''' Biomag 2022 Recap
* '''08/19/2022''' Kunjan Rana - Communication Between the Amygdala and Cortex in the Context of Face Processing
**[https://megcore.nih.gov/MEG/KunjanRana_ClubMEG_08192022.mp4 Recording Download (mp4)]
* '''08/05/2022''' Shruti Japee - Temporal Dynamics of Facial Expression Processing
**[https://megcore.nih.gov/MEG/ShrutiJapee_ClubMEG_FacialExpressionDecoding_08052022.mp4 Recording Download (mp4)]
* '''05/20/2022''' Priyanka Shah (Medical College of Wisconsin) - Resting Connectivity Changes in Temporal Lobe Epilepsy
**[https://megcore.nih.gov/MEG/PriyankaShah-Basak_ClubMEG_05202022.mp4 Recording Download (mp4)]
* '''05/13/2022''' Jess Gilbert - MEG Studies of Treatment-Resistant Depression and Ketamine Response
**[https://megcore.nih.gov/MEG/JessGilbert_ClubMEG_05132022.mp4 Recording Download (mp4)]
* '''04/29/2022''' Ethan Buch [https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay]
** [https://megcore.nih.gov/MEG/EthanBuch_HumanSkill_ClubMEG_04292022.mp4 Recording Download (mp4)]
* '''04/08/2022''' Allison Nugent [https://doi.org/10.1038/s42003-021-01785-z Temporal hierarchy of intrinsic neural timescales converges with spatial core-periphery organization]
** [https://megcore.nih.gov/MEG/AllisonNugent_ClubMEGJournal_04082022.mp4 Recording Download (mp4)]
* '''03/10/2022''' Stephen Robinson - Using Information Theory for MEG Studies
** [https://megcore.nih.gov/MEG/Robinson_InformationTheoryMEG_ClubMEG_03102022.mp4 Recording Download (mp4)]
* '''02/11/2022''' Megan Parker - [https://www.sciencedirect.com/science/article/pii/S000689931301500X?via%3Dihub Neural regulatory mechanism of desire for food: revealed by magnetoencephalography (article)]
* '''11/12/2021''' Amaia Benitez, From ECoG to Magnetocorticography: Optically Pumped Magnetometers for Non-Invasive, High Resolution Imaging
** [https://megcore.nih.gov/MEG/ClubMEG_111221_AmaiaBenitez_OPMs&MCog.mp4 Recording Download (mp4)]
**Slides: [[File:Pdf.png|PDF]] [[Media:ClubMeg ABA OPMs 111221.pdf|OPM and MCog Research Introduction]]
*'''10/22/2021''' Stephen Robinson, Fundamentals of Beamformers (mp4)
** [https://megcore.nih.gov/MEG/ClubMEG_Robinson_Beamforming_10222021.mp4 Recording Download (mp4)]
**Slides: [[File:Pdf.png|PDF]] [[Media:StephenRobinson SAM Beamforming Talk 10222021.pdf|SAM Beamforming Fundamentals]]
*'''10/23/2020''' Angela Wang and Tom Holroyd, Neurofeedback Discussion.
**Slides: [[File:Pdf.png|PDF]] [[Media:Neurofeedback_Review.pdf|Neurofeedback Review]]; [[Media:RT-MEG.pdf|Real-time Beamforming]].

== Previous Tutorials and Training ==
* Jeff Stout (02/17/2023) - Making python modules
**
**[https://docs.python.org/3/distutils/setupscript.html Configuring a setup.py file ]
* Jeff Stout (10/21/2022) - MNE_BIDS/MNE_BIDS_PIPELINE/Biowulf MEG Bids Modules
**[https://megcore.nih.gov/MEG/Stout_MNE-BIDStutorial_10212022.mp4 Recording Download (mp4)]
**[[Image:pdf.png]] [https://megcore.nih.gov/MEG/Stout_ClubMEG_bids_10212022.pdf Slides]
**[[Image:pdf.png]] [https://megcore.nih.gov/MEG/Stout_mne-bids_example_use_10212022.pdf mne-bids example usage]
**Additional Info (referenced in video): https://megcore.nih.gov/index.php/Mne_bids_pipeline
* John Veillette, University of Chicago (10/14/2022) - MNE-ARI (All Resolutions Imaging) Theoretical Overview and Demo
**https://github.com/john-veillette/mne-ari
**[https://megcore.nih.gov/MEG/Veillette_MNE-ARI_ClubMEG_10142022.mp4 Recording Download (mp4)]
* Tom Holroyd (09/30/2022) - Demonstration of SAM beamforming using Sequential Regression (SER) covariance updating for real-time analysis
**[https://megcore.nih.gov/MEG/TomHolroyd_SAM-SER-RealtimeAnalysis_09302022.mp4 Recording Download (mp4)]
* Anna Namyst and Jeff Stout (09/09/2022) - Eye Tracking Overview
** [[Image:pdf.png]] https://jov.arvojournals.org/article.aspx?articleid=2772164
** [[Image:pdf.png]] https://www.biorxiv.org/content/10.1101/2021.07.09.451139v1.full.pdf
** [[Image:pdf.png]] [https://megcore.nih.gov/MEG/ClubMeg_EyeTracking_09092022.pdf Slides]
* Group Session (08/12/2022) - Connectivity Coding Zoom Call [[Meg_information_based_connectivity_coding_session]]
*Andrea Brovelli & Etienne Combrisson, Institut de Neurosciences de la Timone (07/13/2022) - FRITES Theoretical Overview and Demo (Connectivity Calculation and Stats)
**[https://megcore.nih.gov/MEG/FRITES_Tutorial_07132022.mp4 Recording Download (mp4)]
**[https://brainets.github.io/frites/ Website and Github Page] [https://github.com/brainets/CookingFrites Example Training Notebooks]
**[https://doi.org/10.1016/j.neuroimage.2022.119347 Paper: Group-level inference of information-based measures for the analyses of cognitive brain networks from neurophysiological data]
*[https://megcore.nih.gov/index.php?title=MEG_Hackathon_2022 MEG Hackathon ] 05/06/2022
*Eric Earl (04/27/2022) - Github Presentation and Discussion
**[https://docs.google.com/presentation/d/15l6Pb6pUICPSsJi3shWLiAJNlCkngHi0fzht7FKeyqM/edit?usp=sharing Presentation Slides] [https://slides.com/ericearl/gh-repo Advanced Github Features]
** [https://megcore.nih.gov/MEG/EricEarl_ClubMEG_GitHubTutorial_04272022.mp4 Recording Download (mp4)]
**Additional Links:
***[https://osf.io/xt6pk/ ReadTheDocs]
***[https://osf.io/qcyhu/ BioDataClub OSF]
*Jeff Stout, Intro to Git, 04/12/2022 -
**[https://megcore.nih.gov/MEG/JeffStout_GitTutorial_04122022.mp4 Recording Download]
**[https://megcore.nih.gov/MEG/JeffStout_GitTutorial_04122022_commands.txt Git Tutorial Commands ]
**Additional Links:
***[https://nbviewer.org/github/pelson/lessons_for_a_scientific_programmer/blob/master/2014-euroscipy/00_intro.ipynb Scientific Programming Guidelines - Including Git]
*Jeff Stout, Intro Python, 03/29/2022 - [https://megcore.nih.gov/MEG/JeffStout_PythonCoursePart2_03292022.mp4| Dictionaries/Functions/Scripts/Modules/commandline interface -- Recording Download (mp4)]
*Fred Carver & Jeff Stout, [[Tutorial stats 011422| Tutorial Link]] (01/21/22) -- MEG Group Data Analysis in AFNI and MNE Python
**[https://megcore.nih.gov/MEG/ClubMEG_Carver&Stout_MNE&AFNI-GroupAnalysisTutorial_012122.mp4 Recording Download (mp4)]
*Jeff Stout, [[MNE Python Tutorial 2021]] -- Introduction to MEG processing with MNE Python
*NIMH MEG Core Staff, [[NIH MEG Short Course 2018]] -- Useful training materials.

== Special Interest Groups ==

[https://megcore.nih.gov/index.php?title=Machine_Learning_SIG '''Machine Learning Special Interest Group'''] (ML SIG) - 4th Friday of every month 1-2pm. Contact Jeff Stout for more information on joining or presenting.</br>
'''''Prior ML SIG topics:'''''
* '''05/27/2022''' Jeff Stout - [https://www.sciencedirect.com/science/article/pii/S1053811921006777 MEGnet: Automatic ICA-based artifact removal for MEG using spatiotemporal convolutional neural networks]
**[https://megcore.nih.gov/MEG/JeffStout_MEGnetOverview_ML-SIG_05292022.mp4 Recording Download (mp4)]
*'''04/15/2022''' Leonardo Claudino - Decoding Pipeline <ref> https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay Ethan R. Buch, Leonardo Claudino, Romain Quentin, Marlene Bönstrup, Leonardo Cohen</ref><ref>https://github.com/hcps-ninds/Replay ANALYSIS CODE: Consolidation of human skill linked to waking hippocampo-neocortical replay </ref>
** [https://megcore.nih.gov/MEG/LeoClaudino_DecodingPipeline_MEG-ML-SIG_04152022.mp4 Recording Download (mp4)]
*'''03/25/2022''' Mina Kheirkhah Rahimabadi - Classification of brain responses to emotional image stimuli measured with MEG
*'''03/04/2022''' Dave Dash - Decoding speech with MEG <ref>Dash D, Ferrari P, Wang J. Decoding Imagined and Spoken Phrases From Non-invasive Neural (MEG) Signals. Front Neurosci. 2020;14:290. Published 2020 Apr 7. doi:10.3389/fnins.2020.00290</ref> <ref>Dash D, Wisler A, Ferrari P, Davenport EM, Maldjian J, Wang J. MEG Sensor Selection for Neural Speech Decoding. IEEE Access. 2020;8:182320-182337. doi:10.1109/access.2020.3028831</ref> <ref>Dash D, Ferrari P, Dutta S, Wang J. NeuroVAD: Real-Time Voice Activity Detection from Non-Invasive Neuromagnetic Signals. Sensors (Basel). 2020;20(8):2248. Published 2020 Apr 16. doi:10.3390/s20082248</ref>
**[https://megcore.nih.gov/MEG/DebadattaDash_MEG-SpeechDecoding_ClubMEG_03042022.mp4 Recording Download (mp4)]
*'''01/28/2022''' Lina Teichmann - Bayes Factors for Time-series Decoding
**[https://megcore.nih.gov/MEG/Teichmann_MEGMachineLearningSIG_BayesFactorsTimeSeriesDecoding_01282022.mp4 Teichmann 01/28/22 Recording Download (mp4)]
** Slides: [[File:Pdf.png|PDF]] [https://megcore.nih.gov/MEG/Teichmann_BayesFactors_ClubMEG_01282022.pdf Bayes Factors for Time-Series Decoding]
** [https://www.biorxiv.org/content/10.1101/2021.06.23.449663v3.abstract Journal Article] and [https://github.com/LinaTeichmann1/BFF_repo Associated Code]
*'''12/03/2021''' Initial meeting for Machine Learning in MEG SIG - Journal Club discussion: [https://pubmed.ncbi.nlm.nih.gov/28782682/ Deconstructing multivariate decoding for the study of brain function]

==References==

Latest revision as of 15:17, 25 March 2024

Club MEG is our version of a journal club. We welcome NIH MEG researchers to lead discussions on any MEG topic, including interesting papers, experiment ideas, analysis techniques, or finding from your research.

Interested in presenting a topic? Email Fred Carver at carverf@nih.gov or Jeff Stout at stoutjd@nih.gov if you would like to present.

Notifications of upcoming talks are sent to the MEG_ANNOUNCE (NIH MEG Core Users only) and Club-MEG_ANNOUNCE listservs.


Upcoming Talks/Discussions


Other notable dates:
OHBM: 06/(23 - 27)/2024
BIOMAG 08/(26 – 29)/2024

Recent Talks/Discussions

Previous Tutorials and Training

Special Interest Groups

Machine Learning Special Interest Group (ML SIG) - 4th Friday of every month 1-2pm. Contact Jeff Stout for more information on joining or presenting.
Prior ML SIG topics:

References

  1. https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay Ethan R. Buch, Leonardo Claudino, Romain Quentin, Marlene Bönstrup, Leonardo Cohen
  2. https://github.com/hcps-ninds/Replay ANALYSIS CODE: Consolidation of human skill linked to waking hippocampo-neocortical replay
  3. Dash D, Ferrari P, Wang J. Decoding Imagined and Spoken Phrases From Non-invasive Neural (MEG) Signals. Front Neurosci. 2020;14:290. Published 2020 Apr 7. doi:10.3389/fnins.2020.00290
  4. Dash D, Wisler A, Ferrari P, Davenport EM, Maldjian J, Wang J. MEG Sensor Selection for Neural Speech Decoding. IEEE Access. 2020;8:182320-182337. doi:10.1109/access.2020.3028831
  5. Dash D, Ferrari P, Dutta S, Wang J. NeuroVAD: Real-Time Voice Activity Detection from Non-Invasive Neuromagnetic Signals. Sensors (Basel). 2020;20(8):2248. Published 2020 Apr 16. doi:10.3390/s20082248