Difference between revisions of "Club MEG"

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== Upcoming Talks/Discussions ==
 
== Upcoming Talks/Discussions ==
 
* '''''POSTPONED''''' Club MEG: (Presentation) Communication Between the Amygdala and Cortex in the Context of Face Processing - Kunjan Rana
* '''04/08/2022 at 1:00pm''' Club MEG: (Journal Club) [https://doi.org/10.1038/s42003-021-01785-z Temporal hierarchy of intrinsic neural timescales converges with spatial core-periphery organization] - Allison Nugent
 
  +
* '''07/13/2022 at 10:00am (1.5hr)''' FRITES Theoretical Overview and Demo (Connectivity Calculation and Stats) - Etienne Combrisson & Andrea Brovelli - (Institut de Neurosciences de la Timone)
* '''04/12/2022 at 1:00pm''' Intro To Git - Jeff Stout
 
  +
**https://brainets.github.io/frites/
* '''04/15/2022 at 1:00pm''' ML SIG: (Presentation) Decoding Pipeline <ref> https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay Ethan R. Buch, Leonardo Claudino, Romain Quentin, Marlene Bönstrup, Leonardo Cohen</ref><ref>https://github.com/hcps-ninds/Replay ANALYSIS CODE: Consolidation of human skill linked to waking hippocampo-neocortical replay </ref> - Leonardo Claudino
 
 
* '''07/22/2022 at 1:00pm''' Club MEG: (Presentation) - Shruti Japee
* '''04/22/2022 at 1:00pm''' Club MEG: (Journal Club) [https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay] - Ethan Buch
 
* '''04/27/2022 at 1pm''' Github Presentation and Discussion - Eric Earl
 
* '''05/06/2022''' [https://megcore.nih.gov/index.php?title=MEG_Hackathon_2022 MEG Hackathon ] 9-5pm in FAES Classroom #7
 
* '''05/13/2022 at 1:00pm''' Club MEG: (Presentation) - Jess Gilbert
 
* '''05/20/2022 at 1:00pm''' Club MEG: (Presentation) - Resting Connectivity Changes in Temporal Lobe Epilepsy - Priyanka Shah - (Medical College of Wisconsin)
 
* '''05/27/2022 at 1:00pm''' ML SIG: (Journal Club) [https://www.sciencedirect.com/science/article/pii/S1053811921006777 MEGnet: Automatic ICA-based artifact removal for MEG using spatiotemporal convolutional neural networks] - Jeff Stout
 
* '''06/10/2022 at 1:00pm''' Club MEG: (Presentation) Communication Between the Amygdala and Cortex in the Context of Face Processing - Kunjan Rana
 
* '''07/15/2022 at 1:00pm''' Club MEG: (Presentation) - Shruti Japee
 
 
* '''07/29/2022 at 1:00pm''' ML SIG: (Journal Club) - Tom Holroyd
 
* '''07/29/2022 at 1:00pm''' ML SIG: (Journal Club) - Tom Holroyd
 
* '''08/12/2022 at 1:00pm''' Club MEG: (Journal Club) - Sarah Grewal
 
* '''08/12/2022 at 1:00pm''' Club MEG: (Journal Club) - Sarah Grewal
 
* '''08/26/2022 at 1:00pm''' Club MEG: (Journal Club) - Sharif Kronemer
 
* '''09/16/2022 at 1:00pm''' Club MEG: (Journal Club) - Lindsay Oberman
 
* '''09/16/2022 at 1:00pm''' Club MEG: (Journal Club) - Lindsay Oberman
* '''10/13/2022 at 1:00pm''' Club MEG: (Journal Club) - Anna Namyst
+
* '''10/14/2022 at 1:00pm''' Club MEG: MNE-ARI (All Resolutions Imaging) Theoretical Overview and Demo - John Veillette - (University of Chicago)
  +
**https://github.com/john-veillette/mne-ari
* '''11/??/2022 at 1:00pm''' Club MEG: (Journal Club) - Fred Carver
 
 
* '''11/18/2022 at 1:00pm''' Club MEG: (Journal Club) - Anna Namyst
   
 
== Recent Talks/Discussions ==
 
== Recent Talks/Discussions ==
 
* '''05/20/2022''' Priyanka Shah (Medical College of Wisconsin) - Resting Connectivity Changes in Temporal Lobe Epilepsy
  +
**[https://megcore.nih.gov/MEG/PriyankaShah-Basak_ClubMEG_05202022.mp4 Recording Download (mp4)]
  +
* '''05/13/2022''' Jess Gilbert - MEG Studies of Treatment-Resistant Depression and Ketamine Response
  +
**[https://megcore.nih.gov/MEG/JessGilbert_ClubMEG_05132022.mp4 Recording Download (mp4)]
 
* '''04/29/2022''' Ethan Buch [https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay]
  +
** [https://megcore.nih.gov/MEG/EthanBuch_HumanSkill_ClubMEG_04292022.mp4 Recording Download (mp4)]
 
* '''04/08/2022''' Allison Nugent [https://doi.org/10.1038/s42003-021-01785-z Temporal hierarchy of intrinsic neural timescales converges with spatial core-periphery organization]
  +
** [https://megcore.nih.gov/MEG/AllisonNugent_ClubMEGJournal_04082022.mp4 Recording Download (mp4)]
 
* '''03/10/2022''' Stephen Robinson - [https://megcore.nih.gov/MEG/Robinson_InformationTheoryMEG_ClubMEG_03102022.mp4 Using Information Theory for MEG Studies (mp4)]
 
* '''03/10/2022''' Stephen Robinson - [https://megcore.nih.gov/MEG/Robinson_InformationTheoryMEG_ClubMEG_03102022.mp4 Using Information Theory for MEG Studies (mp4)]
 
* '''02/11/2022''' Megan Parker - [https://www.sciencedirect.com/science/article/pii/S000689931301500X?via%3Dihub Neural regulatory mechanism of desire for food: revealed by magnetoencephalography (article)]
 
* '''02/11/2022''' Megan Parker - [https://www.sciencedirect.com/science/article/pii/S000689931301500X?via%3Dihub Neural regulatory mechanism of desire for food: revealed by magnetoencephalography (article)]
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== Previous Tutorials and Training ==
 
== Previous Tutorials and Training ==
 
*[https://megcore.nih.gov/index.php?title=MEG_Hackathon_2022 MEG Hackathon ] 05/06/2022
*Jeff Stout, Intro Python, 03/29/2022 - [https://megcore.nih.gov/MEG/JeffStout_PythonCoursePart2_03292022.mp4| Dictionaries/Functions/Scripts/Modules/commandline interface (mp4)]
 
 
*Eric Earl, Github Presentation and Discussion, 04/27/2022
  +
**[https://docs.google.com/presentation/d/15l6Pb6pUICPSsJi3shWLiAJNlCkngHi0fzht7FKeyqM/edit?usp=sharing Presentation Slides] [https://slides.com/ericearl/gh-repo Advanced Github Features]
  +
** [https://megcore.nih.gov/MEG/EricEarl_ClubMEG_GitHubTutorial_04272022.mp4 Recording Download (mp4)]
  +
**Additional Links:
  +
***[https://osf.io/xt6pk/ ReadTheDocs]
  +
***[https://osf.io/qcyhu/ BioDataClub OSF]
  +
*Jeff Stout, Intro to Git, 04/12/2022 -
  +
**[https://megcore.nih.gov/MEG/JeffStout_GitTutorial_04122022.mp4 Recording Download]
  +
**[https://megcore.nih.gov/MEG/JeffStout_GitTutorial_04122022_commands.txt Git Tutorial Commands ]
 
*Jeff Stout, Intro Python, 03/29/2022 - [https://megcore.nih.gov/MEG/JeffStout_PythonCoursePart2_03292022.mp4| Dictionaries/Functions/Scripts/Modules/commandline interface -- Recording Download (mp4)]
 
*Fred Carver & Jeff Stout, [[Tutorial stats 011422| Tutorial Link]] (01/21/22) -- MEG Group Data Analysis in AFNI and MNE Python
 
*Fred Carver & Jeff Stout, [[Tutorial stats 011422| Tutorial Link]] (01/21/22) -- MEG Group Data Analysis in AFNI and MNE Python
**Recording Download: [https://megcore.nih.gov/MEG/ClubMEG_Carver&Stout_MNE&AFNI-GroupAnalysisTutorial_012122.mp4 MEG Group Data Analysis Tutorial (mp4)]
+
**[https://megcore.nih.gov/MEG/ClubMEG_Carver&Stout_MNE&AFNI-GroupAnalysisTutorial_012122.mp4 Recording Download (mp4)]
 
*Jeff Stout, [[MNE Python Tutorial 2021]] -- Introduction to MEG processing with MNE Python
 
*Jeff Stout, [[MNE Python Tutorial 2021]] -- Introduction to MEG processing with MNE Python
 
*NIMH MEG Core Staff, [[NIH MEG Short Course 2018]] -- Useful training materials.
 
*NIMH MEG Core Staff, [[NIH MEG Short Course 2018]] -- Useful training materials.
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[https://megcore.nih.gov/index.php?title=Machine_Learning_SIG '''Machine Learning Special Interest Group'''] (ML SIG) - 4th Friday of every month 1-2pm. Contact Jeff Stout for more information on joining or presenting.</br>
 
[https://megcore.nih.gov/index.php?title=Machine_Learning_SIG '''Machine Learning Special Interest Group'''] (ML SIG) - 4th Friday of every month 1-2pm. Contact Jeff Stout for more information on joining or presenting.</br>
 
'''''Prior ML SIG topics:'''''
 
'''''Prior ML SIG topics:'''''
 
* '''05/27/2022''' Jeff Stout - [https://www.sciencedirect.com/science/article/pii/S1053811921006777 MEGnet: Automatic ICA-based artifact removal for MEG using spatiotemporal convolutional neural networks]
  +
**[https://megcore.nih.gov/MEG/JeffStout_MEGnetOverview_ML-SIG_05292022.mp4 Recording Download (mp4)]
 
*'''04/15/2022''' Leonardo Claudino - Decoding Pipeline <ref> https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay Ethan R. Buch, Leonardo Claudino, Romain Quentin, Marlene Bönstrup, Leonardo Cohen</ref><ref>https://github.com/hcps-ninds/Replay ANALYSIS CODE: Consolidation of human skill linked to waking hippocampo-neocortical replay </ref>
  +
** [https://megcore.nih.gov/MEG/LeoClaudino_DecodingPipeline_MEG-ML-SIG_04152022.mp4 Recording Download (mp4)]
 
*'''03/25/2022''' Mina Kheirkhah Rahimabadi - Classification of brain responses to emotional image stimuli measured with MEG
 
*'''03/25/2022''' Mina Kheirkhah Rahimabadi - Classification of brain responses to emotional image stimuli measured with MEG
 
*'''03/04/2022''' Dave Dash - Decoding speech with MEG <ref>Dash D, Ferrari P, Wang J. Decoding Imagined and Spoken Phrases From Non-invasive Neural (MEG) Signals. Front Neurosci. 2020;14:290. Published 2020 Apr 7. doi:10.3389/fnins.2020.00290</ref> <ref>Dash D, Wisler A, Ferrari P, Davenport EM, Maldjian J, Wang J. MEG Sensor Selection for Neural Speech Decoding. IEEE Access. 2020;8:182320-182337. doi:10.1109/access.2020.3028831</ref> <ref>Dash D, Ferrari P, Dutta S, Wang J. NeuroVAD: Real-Time Voice Activity Detection from Non-Invasive Neuromagnetic Signals. Sensors (Basel). 2020;20(8):2248. Published 2020 Apr 16. doi:10.3390/s20082248</ref>
 
*'''03/04/2022''' Dave Dash - Decoding speech with MEG <ref>Dash D, Ferrari P, Wang J. Decoding Imagined and Spoken Phrases From Non-invasive Neural (MEG) Signals. Front Neurosci. 2020;14:290. Published 2020 Apr 7. doi:10.3389/fnins.2020.00290</ref> <ref>Dash D, Wisler A, Ferrari P, Davenport EM, Maldjian J, Wang J. MEG Sensor Selection for Neural Speech Decoding. IEEE Access. 2020;8:182320-182337. doi:10.1109/access.2020.3028831</ref> <ref>Dash D, Ferrari P, Dutta S, Wang J. NeuroVAD: Real-Time Voice Activity Detection from Non-Invasive Neuromagnetic Signals. Sensors (Basel). 2020;20(8):2248. Published 2020 Apr 16. doi:10.3390/s20082248</ref>
** Recording Download: [https://megcore.nih.gov/MEG/DebadattaDash_MEG-SpeechDecoding_ClubMEG_03042022.mp4 Dash 03/04/22 (mp4)]
+
**[https://megcore.nih.gov/MEG/DebadattaDash_MEG-SpeechDecoding_ClubMEG_03042022.mp4 Recording Download (mp4)]
 
*'''01/28/2022''' Lina Teichmann - Bayes Factors for Time-series Decoding
 
*'''01/28/2022''' Lina Teichmann - Bayes Factors for Time-series Decoding
** Recording Download: [https://megcore.nih.gov/MEG/Teichmann_MEGMachineLearningSIG_BayesFactorsTimeSeriesDecoding_01282022.mp4 Teichmann 01/28/22 (mp4)]
+
**[https://megcore.nih.gov/MEG/Teichmann_MEGMachineLearningSIG_BayesFactorsTimeSeriesDecoding_01282022.mp4 Teichmann 01/28/22 Recording Download (mp4)]
 
** Slides: [[File:Pdf.png|PDF]] [https://megcore.nih.gov/MEG/Teichmann_BayesFactors_ClubMEG_01282022.pdf Bayes Factors for Time-Series Decoding]
 
** Slides: [[File:Pdf.png|PDF]] [https://megcore.nih.gov/MEG/Teichmann_BayesFactors_ClubMEG_01282022.pdf Bayes Factors for Time-Series Decoding]
 
** [https://www.biorxiv.org/content/10.1101/2021.06.23.449663v3.abstract Journal Article] and [https://github.com/LinaTeichmann1/BFF_repo Associated Code]
 
** [https://www.biorxiv.org/content/10.1101/2021.06.23.449663v3.abstract Journal Article] and [https://github.com/LinaTeichmann1/BFF_repo Associated Code]

Revision as of 11:00, 24 June 2022

Club MEG is our version of a journal club. We welcome NIH MEG researchers to lead discussions on any MEG topic, including interesting papers, experiment ideas, analysis techniques, or finding from your research.

Interested in presenting a topic? Email Fred Carver at carverf@nih.gov or Jeff Stout at stoutjd@nih.gov if you would like to present.

Notifications of upcoming talks are sent to the MEG_ANNOUNCE listserv.

Upcoming Talks/Discussions

  • POSTPONED Club MEG: (Presentation) Communication Between the Amygdala and Cortex in the Context of Face Processing - Kunjan Rana
  • 07/13/2022 at 10:00am (1.5hr) FRITES Theoretical Overview and Demo (Connectivity Calculation and Stats) - Etienne Combrisson & Andrea Brovelli - (Institut de Neurosciences de la Timone)
  • 07/22/2022 at 1:00pm Club MEG: (Presentation) - Shruti Japee
  • 07/29/2022 at 1:00pm ML SIG: (Journal Club) - Tom Holroyd
  • 08/12/2022 at 1:00pm Club MEG: (Journal Club) - Sarah Grewal
  • 08/26/2022 at 1:00pm Club MEG: (Journal Club) - Sharif Kronemer
  • 09/16/2022 at 1:00pm Club MEG: (Journal Club) - Lindsay Oberman
  • 10/14/2022 at 1:00pm Club MEG: MNE-ARI (All Resolutions Imaging) Theoretical Overview and Demo - John Veillette - (University of Chicago)
  • 11/18/2022 at 1:00pm Club MEG: (Journal Club) - Anna Namyst

Recent Talks/Discussions

Previous Tutorials and Training

Special Interest Groups

Machine Learning Special Interest Group (ML SIG) - 4th Friday of every month 1-2pm. Contact Jeff Stout for more information on joining or presenting.
Prior ML SIG topics:

References

  1. https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay Ethan R. Buch, Leonardo Claudino, Romain Quentin, Marlene Bönstrup, Leonardo Cohen
  2. https://github.com/hcps-ninds/Replay ANALYSIS CODE: Consolidation of human skill linked to waking hippocampo-neocortical replay
  3. Dash D, Ferrari P, Wang J. Decoding Imagined and Spoken Phrases From Non-invasive Neural (MEG) Signals. Front Neurosci. 2020;14:290. Published 2020 Apr 7. doi:10.3389/fnins.2020.00290
  4. Dash D, Wisler A, Ferrari P, Davenport EM, Maldjian J, Wang J. MEG Sensor Selection for Neural Speech Decoding. IEEE Access. 2020;8:182320-182337. doi:10.1109/access.2020.3028831
  5. Dash D, Ferrari P, Dutta S, Wang J. NeuroVAD: Real-Time Voice Activity Detection from Non-Invasive Neuromagnetic Signals. Sensors (Basel). 2020;20(8):2248. Published 2020 Apr 16. doi:10.3390/s20082248