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Club MEG is our version of a journal club. We welcome NIH MEG researchers to lead discussions on any MEG topic, including interesting papers, experiment ideas, analysis techniques, or finding from your research. |
Club MEG is our version of a journal club. We welcome NIH MEG researchers to lead discussions on any MEG topic, including interesting papers, experiment ideas, analysis techniques, or finding from your research. |
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Interested in presenting a topic? Email '''Fred Carver at carverf@nih.gov''' or '''Jeff Stout at stoutjd@nih.gov''' if you would like to present. |
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== Upcoming Talks/Discussions == |
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Notifications of upcoming talks are sent to the [https://list.nih.gov/cgi-bin/wa.exe?A0=meg_announce MEG_ANNOUNCE] |
Notifications of upcoming talks are sent to the [https://list.nih.gov/cgi-bin/wa.exe?A0=meg_announce MEG_ANNOUNCE (NIH MEG Core Users only)] and [https://list.nih.gov/cgi-bin/wa.exe?SUBED1=CLUB-MEG_ANNOUNCE&A=1 Club-MEG_ANNOUNCE] listservs. |
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Please email '''Fred Carver at carverf@nih.gov''' if you would like to present. |
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== |
== Upcoming Talks/Discussions == |
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* '''12/20/2024''' |
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** Prabhakararao Eedara |
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** Amaia Benitez Andonegui |
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* '''1/**/2024''' |
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** Ryan Oakeson - Recap Speech In Noise (SPIN) Workshop |
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* '''3/**/2025''' |
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** Alexis Kidder |
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* '''*spring*/**/2025''' |
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** Advanced Topics Short Course |
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*** Connectivity |
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*** Decoding |
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*** Naturalistic Viewing Analysis |
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*** Microstates |
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</br> |
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*Two members of our staff, Angela Wang and Tom Holroyd, led a discussion on neurofeedback. Here are the slides: [[Media:Neurofeedback_Review.pdf|neurofeedback review]]; [[Media:RT-MEG.pdf|real-time beamforming]]. |
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Other notable dates:</br> |
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<!-- Note to self: Don't schedule during these times: --> |
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'''OHBM:''' 06/(23 - 27)/2024 </br> |
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'''BIOMAG''' 08/(26 – 29)/2024 </br> |
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'''Possible DC Brainhack''' --/--/2024 <br> |
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== Recent |
== Recent Talks/Discussions == |
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* '''11/18-19/2024''' |
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** MEG Beginner Short Course - "Squid School" |
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*** https://github.com/nih-megcore/NIMH_MEG_workshop |
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* '''11/01/2024''' |
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** Jess Gilbert |
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*** [https://www.sciencedirect.com/science/article/pii/S0165032724013508?via%3Dihub Electrophysiological predictors of early response to antidepressants in major depressive disorder] |
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** Lina Teichmann |
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*** [https://www.sciencedirect.com/science/article/pii/S1053811921008016?ref=pdf_download&fr=RR-2&rr=8d9cd909f837c484 Contactless measurements of retinal activity using optically pumped magnetometers] |
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* '''10/23/2024 1:30 - NMR Conf Room''' |
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** John Hale - Modeling fMRI time courses with linguistic structure |
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* '''10/18/2024''' |
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** Jeff Stout - BIDS QA GUI Demo |
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* '''10/04/2024''' |
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** Ivano Triggiani - [https://link.springer.com/article/10.1007/s10548-024-01073-z MEG Microstates: An Investigation of Underlying Brain Sources and Potential Neurophysiological Processes] |
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** Carlos Cortes - [https://www.sciencedirect.com/science/article/pii/S1053811922001355 MEG cortical microstates: Spatiotemporal characteristics, dynamic functional connectivity and stimulus-evoked responses] |
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* '''08/02/2024''' |
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** Jeff Stout, ''GUI demo for BIDS creation and additional processing'' (email Jeff for slides and further information) |
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* '''08/15/2024''' |
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** Allison Nugent, [https://www.youtube.com/watch?v=lsH6SZeUbeY&feature=youtu.be ''fMRI Summer Course'': Magnetoencephalography lecture] |
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* '''07/12/2024''' |
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** Allison Nugent |
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*** [https://onlinelibrary.wiley.com/doi/full/10.1002/hbm.26466?campaign=wolearlyview Multiplexity of human brain oscillations as a personal brain signature] |
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** Lindsay Oberman |
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*** [https://link.springer.com/article/10.1007/s10803-023-05907-w No Differences in Auditory Steady-State Responses in Children with Autism Spectrum Disorder and Typically Developing Children] |
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* '''06/21/2024 1-2pm''' |
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** Sebastian Montesinos, [https://www.nature.com/articles/s41467-019-09239-1 How face perception unfolds over time], Dobs et al. (2019) |
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** Jeff Stout, [https://pubmed.ncbi.nlm.nih.gov/32822098/ Alpha oscillations do not implement gain control in early visual cortex but rather gating in parieto-occipital regions ] |
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* '''06/14/2024 1-2pm''' |
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** Peter Krueger, NMR Conference Room (and on Zoom) |
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* '''05/24/2024 at 11:00am''' FAES classrooms Building 10 |
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** Tijl Grootswagers : Seeing in a Flash: Neural Decoding of Rapid Object Recognition |
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* '''05/24/2024 at 1:00pm''' 2X Journal Article |
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** Lucrezia Liuzzi, [https://direct.mit.edu/imag/article/doi/10.1162/imag_a_00119/119996/Towards-a-more-robust-non-invasive-assessment-of "Towards a more robust non-invasive assessment of functional connectivity "] |
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** Anna Namyst, [https://www.biorxiv.org/content/10.1101/2024.04.19.590280v1 "Hierarchical dynamic coding coordinates speech comprehension in the brain"] Gwilliams et al. (''*preprint'') |
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* '''04/19/2024 at 1:00pm''' 2X Journal Article |
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*[[MNE Python Tutorial 10 01 21]] |
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** Shruti Japee |
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*** [https://pubmed.ncbi.nlm.nih.gov/37365829/ Objects sharpen visual scene representations: evidence from MEG decoding] |
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** Ryan Oakeson |
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*** [https://www.biorxiv.org/content/10.1101/2023.06.23.546249v2.full.pdf An adversarial collaboration to critically evaluate theories of consciousness ] |
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* '''03/08/2024 at 1:00pm''' 2X Journal Article |
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** Shivam Bansal |
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*** [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10902297/pdf/42003_2024_Article_5927.pdf Linking structural and functional changes during aging using multilayer brain network analysis ] |
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** Amaia Benitez Andonegui |
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*** [https://www.pnas.org/doi/full/10.1073/pnas.1508523113 Brain responses in humans reveal ideal observer-like sensitivity to complex acoustic patterns] |
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* '''02/23/2024''' Yoojin Lee - Dysregulated connectivity among insula, postcentral gyrus, and precuneus and its association with suicide risk |
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* '''02/16/2024''' 2X Journal Article |
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** Fred Carver |
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*** [https://www.biomedcentral.com/epdf/10.1186/s12984-015-0076-7?sharing_token=mkccASrrnNz9b8w0BMAJ82_BpE1tBhCbnbw3BuzI2RNVoDKPinmyo4Rqp7Gjl8B4zqtKDO-MMrgZh-FgW06gwuL_Dl39uXBVRbbC4vqoHXQJBKV6_KXny6x6KAlhDvqL4tZzdevxq1WLF85j0Mafb7m5Aoq0vs43lwARUHXqlYA%3D MEG-based neurofeedback for hand rehabilitation ] |
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** Jeff Stout |
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*** [https://www.sciencedirect.com/science/article/pii/S105381192200492X The natural frequencies of the resting human brain ] |
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* '''01/26/2024''' Megan Parker - A smartphone delivered attention retraining intervention for altering neural underpinnings of food attention bias in adolescent girls with overweight or obesity |
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* '''11/08/2023-11/09/2023''' MEG North America (at NIH campus) - https://megcore.nih.gov/index.php/MEG_North_America_Workshop |
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* '''10/20/2023''' Club MEG: (Multi-Presenter: 3x 15min talks) |
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** Elena Hayday |
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*** [https://www.sciencedirect.com/science/article/pii/S138824572300737X?casa_token=lP2ya9xhlBQAAAAA:7vx20m6eqPwKvc90PtswFxeZaVrYEklGAMg46guMAzy5fb_uDtMkA-HhcZAftdmFI6I2wQ Language MEG predicts postoperative verbal memory change in left mesial temporal lobe epilepsy] |
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** Pei Robins |
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*** [https://www.jneurosci.org/content/jneuro/42/47/8807.full.pdf Whole-Brain Propagation Delays in Multiple Sclerosis, a Combined Tractography-Magnetoencephalography Study] |
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** Amy Xu |
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*** [https://www.sciencedirect.com/science/article/pii/S0165032722011405?via%3Dihub Convergent and divergent cognitive impairment of unipolar and bipolar depression: A magnetoencephalography resting-state study] |
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* '''09/27(Wednesday) & 10/04/2023(Wednesday)''' |
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** [https://megcore.nih.gov/index.php/MEG_training_course_2023 MEG Training Course] |
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** [https://github.com/nih-megcore/MEG_workshop_2023 Code: Course Github Page] |
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* '''08/18/2023''' Arshitha Basavaraj and Jeff Stout - Curating / Uploading / Editing / Versioning MEG BIDS data for OpenNeuro |
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* '''08/04/2023''' Sue Tong and Daniel Eisenberg - Schizophrenia, antipsychotic treatment, and cortical function |
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* '''07/28/2023''' Riley Hochstein - Magnetocardiography with OPMs |
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* '''06/30/2023''' Club MEG: (Multi-Presenter: 3x 15min talks) |
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**Sebastian Montesinos |
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***[https://elifesciences.org/articles/33904 Differential temporal dynamics during visual imagery and perception] |
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**Miguel Jaime |
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***[https://molecularautism.biomedcentral.com/articles/10.1186/s13229-022-00498-2 Globally elevated excitation–inhibition ratio in children with autism spectrum disorder and below-average intelligence] |
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**Bess Bloomer |
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***[https://www.sciencedirect.com/science/article/pii/S2213158223000530 Functional connectivity changes during working memory in autism spectrum disorder: A two-year longitudinal MEG study] |
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* '''05/19/2023''' Club MEG: (Multi-Presenter: 3X 15min talks) |
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**Angela Wang |
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***[https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7342265/ Localization of Early-Stage Visual Processing Deficits at Schizophrenia Spectrum Illness Onset Using Magnetoencephalography ] |
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**Price Withers |
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***[https://www.sciencedirect.com/science/article/pii/S1053811921002007?via%3Dihub Dynamic analysis on simultaneous iEEG-MEG data via hidden Markov model] |
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**Kaya Scheman |
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***[https://www.sciencedirect.com/science/article/pii/S138824571830261X Advanced dynamic statistical parametric mapping with MEG in localizing epileptogenicity of the bottom of sulcus dysplasia] |
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* '''05/12/2023''' Christian Brodbeck (University of Connecticut) - Eelbrain Software Demonstration (for neurophysiological statistics) |
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**https://eelbrain.readthedocs.io/en/r-0.27/index.html |
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* '''05/05/2023''' -- [https://megcore.nih.gov/index.php/MEG_Hackathon_2023 '''MEG Hackathon 2023'''] |
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** [https://github.com/nih-megcore/MEGHACK_2023_spring GitHub_Repos] |
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* '''04/28/2023 at 1:00pm''' Club MEG: Abbas Babajani-Feremi - (University of Florida) - ''MEG Presurgical Language Mapping Using a Novel Automatic Equivalent Current Dipole Algorithm (AsECDa) in Comparison with MNE, dSPM, and DICS Beamformer'' |
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**[https://megcore.nih.gov/MEG/AbbasBabajani-Feremi_ClubMEG_04282023.mp4 Recording Download (mp4)] |
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* '''04/21/2023 at 1:00pm''' Hackathon Prep -- Go over ideas and best practices - setup git repos for the project. |
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**[https://megcore.nih.gov/index.php/MEG_Hackathon_2023 MEG Hackathon 2023 -- SIGN UP!] |
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* '''03/03/2023''' Graham Flick (New York University) - ''Visual word recognition in natural reading: A co-registered MEG and eye-tracking study'' |
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* '''02/24/2023''' Georgios Michalareas (Max Planck Institute) - [https://www.sciencedirect.com/science/article/pii/S0896627315011204?via%3Dihub Alpha-Beta and Gamma Rhythms Subserve Feedback and Feedforward Influences among Human Visual Cortical Areas] |
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* '''02/03/2023''' Lina Teichman and Amaia Benitez Andonegui - The temporal evolution of colour-space geometries in the human brain |
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* '''01/27/2023''' Lucrezia Liuzzi - Identifying markers of cognitive control |
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* '''12/09/2022''' Ryan Oakeson and Amaia Benitez, [https://www.biorxiv.org/content/10.1101/2022.05.31.494173v3 Top-down information flow drives lexical access when listening to continuous speech] |
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* '''12/02/2022''' Anna Namyst, [https://www.frontiersin.org/articles/10.3389/fpsyg.2016.00995/full Establishing New Mappings between Familiar Phones: Neural and Behavioral Evidence for Early Automatic Processing of Nonnative Contrasts] |
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* '''10/28/2022''' - Sharif Kronemer - "The neural mechanisms of afterimages: A model of illusory conscious perception" |
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**[https://megcore.nih.gov/MEG/SharifKronemer_ClubMEG_10282022.mp4 Recording Download (mp4)] |
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* '''10/07/2022''' - Sarah Grewal - [https://pubs.rsna.org/doi/10.1148/radiol.212453 On-Scalp Optically Pumped Magnetometers versus Cryogenic Magnetoencephalography for Diagnostic Evaluation of Epilepsy in School-aged Children (Journal Article)] |
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**[https://megcore.nih.gov/MEG/SarahGrewal_ClubMEG_10072022.mp4 Recording Download (mp4)] |
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* '''09/16/2022''' Lindsay Oberman - Autism background, MEG autism biomarkers, interventional approach, and preliminary study results |
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**[https://megcore.nih.gov/MEG/Oberman_ClubMEG_09162022.mp4 Recording Download (mp4)] |
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** [https://pubmed.ncbi.nlm.nih.gov/25745372/ Prospective MEG biomarkers in ASD: pre-clinical evidence and clinical promise of electrophysiological signatures] |
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* '''09/15/2022''' Biomag 2022 Recap |
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* '''08/19/2022''' Kunjan Rana - Communication Between the Amygdala and Cortex in the Context of Face Processing |
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**[https://megcore.nih.gov/MEG/KunjanRana_ClubMEG_08192022.mp4 Recording Download (mp4)] |
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* '''08/05/2022''' Shruti Japee - Temporal Dynamics of Facial Expression Processing |
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**[https://megcore.nih.gov/MEG/ShrutiJapee_ClubMEG_FacialExpressionDecoding_08052022.mp4 Recording Download (mp4)] |
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* '''05/20/2022''' Priyanka Shah (Medical College of Wisconsin) - Resting Connectivity Changes in Temporal Lobe Epilepsy |
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**[https://megcore.nih.gov/MEG/PriyankaShah-Basak_ClubMEG_05202022.mp4 Recording Download (mp4)] |
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* '''05/13/2022''' Jess Gilbert - MEG Studies of Treatment-Resistant Depression and Ketamine Response |
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**[https://megcore.nih.gov/MEG/JessGilbert_ClubMEG_05132022.mp4 Recording Download (mp4)] |
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* '''04/29/2022''' Ethan Buch [https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay] |
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** [https://megcore.nih.gov/MEG/EthanBuch_HumanSkill_ClubMEG_04292022.mp4 Recording Download (mp4)] |
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* '''04/08/2022''' Allison Nugent [https://doi.org/10.1038/s42003-021-01785-z Temporal hierarchy of intrinsic neural timescales converges with spatial core-periphery organization] |
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** [https://megcore.nih.gov/MEG/AllisonNugent_ClubMEGJournal_04082022.mp4 Recording Download (mp4)] |
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* '''03/10/2022''' Stephen Robinson - Using Information Theory for MEG Studies |
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** [https://megcore.nih.gov/MEG/Robinson_InformationTheoryMEG_ClubMEG_03102022.mp4 Recording Download (mp4)] |
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* '''02/11/2022''' Megan Parker - [https://www.sciencedirect.com/science/article/pii/S000689931301500X?via%3Dihub Neural regulatory mechanism of desire for food: revealed by magnetoencephalography (article)] |
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* '''11/12/2021''' Amaia Benitez, From ECoG to Magnetocorticography: Optically Pumped Magnetometers for Non-Invasive, High Resolution Imaging |
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** [https://megcore.nih.gov/MEG/ClubMEG_111221_AmaiaBenitez_OPMs&MCog.mp4 Recording Download (mp4)] |
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**Slides: [[File:Pdf.png|PDF]] [[Media:ClubMeg ABA OPMs 111221.pdf|OPM and MCog Research Introduction]] |
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*'''10/22/2021''' Stephen Robinson, Fundamentals of Beamformers (mp4) |
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** [https://megcore.nih.gov/MEG/ClubMEG_Robinson_Beamforming_10222021.mp4 Recording Download (mp4)] |
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**Slides: [[File:Pdf.png|PDF]] [[Media:StephenRobinson SAM Beamforming Talk 10222021.pdf|SAM Beamforming Fundamentals]] |
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*'''10/23/2020''' Angela Wang and Tom Holroyd, Neurofeedback Discussion. |
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**Slides: [[File:Pdf.png|PDF]] [[Media:Neurofeedback_Review.pdf|Neurofeedback Review]]; [[Media:RT-MEG.pdf|Real-time Beamforming]]. |
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== Previous Tutorials and Training == |
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* Jeff Stout (02/17/2023) - Making python modules |
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** |
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**[https://docs.python.org/3/distutils/setupscript.html Configuring a setup.py file ] |
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* Jeff Stout (10/21/2022) - MNE_BIDS/MNE_BIDS_PIPELINE/Biowulf MEG Bids Modules |
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**[https://megcore.nih.gov/MEG/Stout_MNE-BIDStutorial_10212022.mp4 Recording Download (mp4)] |
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**[[Image:pdf.png]] [https://megcore.nih.gov/MEG/Stout_ClubMEG_bids_10212022.pdf Slides] |
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**[[Image:pdf.png]] [https://megcore.nih.gov/MEG/Stout_mne-bids_example_use_10212022.pdf mne-bids example usage] |
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**Additional Info (referenced in video): https://megcore.nih.gov/index.php/Mne_bids_pipeline |
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* John Veillette, University of Chicago (10/14/2022) - MNE-ARI (All Resolutions Imaging) Theoretical Overview and Demo |
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**https://github.com/john-veillette/mne-ari |
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**[https://megcore.nih.gov/MEG/Veillette_MNE-ARI_ClubMEG_10142022.mp4 Recording Download (mp4)] |
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* Tom Holroyd (09/30/2022) - Demonstration of SAM beamforming using Sequential Regression (SER) covariance updating for real-time analysis |
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**[https://megcore.nih.gov/MEG/TomHolroyd_SAM-SER-RealtimeAnalysis_09302022.mp4 Recording Download (mp4)] |
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* Anna Namyst and Jeff Stout (09/09/2022) - Eye Tracking Overview |
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** [[Image:pdf.png]] https://jov.arvojournals.org/article.aspx?articleid=2772164 |
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** [[Image:pdf.png]] https://www.biorxiv.org/content/10.1101/2021.07.09.451139v1.full.pdf |
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** [[Image:pdf.png]] [https://megcore.nih.gov/MEG/ClubMeg_EyeTracking_09092022.pdf Slides] |
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* Group Session (08/12/2022) - Connectivity Coding Zoom Call [[Meg_information_based_connectivity_coding_session]] |
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*Andrea Brovelli & Etienne Combrisson, Institut de Neurosciences de la Timone (07/13/2022) - FRITES Theoretical Overview and Demo (Connectivity Calculation and Stats) |
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**[https://megcore.nih.gov/MEG/FRITES_Tutorial_07132022.mp4 Recording Download (mp4)] |
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**[https://brainets.github.io/frites/ Website and Github Page] [https://github.com/brainets/CookingFrites Example Training Notebooks] |
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**[https://doi.org/10.1016/j.neuroimage.2022.119347 Paper: Group-level inference of information-based measures for the analyses of cognitive brain networks from neurophysiological data] |
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*[https://megcore.nih.gov/index.php?title=MEG_Hackathon_2022 MEG Hackathon ] 05/06/2022 |
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*Eric Earl (04/27/2022) - Github Presentation and Discussion |
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**[https://docs.google.com/presentation/d/15l6Pb6pUICPSsJi3shWLiAJNlCkngHi0fzht7FKeyqM/edit?usp=sharing Presentation Slides] [https://slides.com/ericearl/gh-repo Advanced Github Features] |
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** [https://megcore.nih.gov/MEG/EricEarl_ClubMEG_GitHubTutorial_04272022.mp4 Recording Download (mp4)] |
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**Additional Links: |
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***[https://osf.io/xt6pk/ ReadTheDocs] |
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***[https://osf.io/qcyhu/ BioDataClub OSF] |
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*Jeff Stout, Intro to Git, 04/12/2022 - |
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**[https://megcore.nih.gov/MEG/JeffStout_GitTutorial_04122022.mp4 Recording Download] |
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**[https://megcore.nih.gov/MEG/JeffStout_GitTutorial_04122022_commands.txt Git Tutorial Commands ] |
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**Additional Links: |
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***[https://nbviewer.org/github/pelson/lessons_for_a_scientific_programmer/blob/master/2014-euroscipy/00_intro.ipynb Scientific Programming Guidelines - Including Git] |
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*Jeff Stout, Intro Python, 03/29/2022 - [https://megcore.nih.gov/MEG/JeffStout_PythonCoursePart2_03292022.mp4| Dictionaries/Functions/Scripts/Modules/commandline interface -- Recording Download (mp4)] |
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*Fred Carver & Jeff Stout, [[Tutorial stats 011422| Tutorial Link]] (01/21/22) -- MEG Group Data Analysis in AFNI and MNE Python |
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**[https://megcore.nih.gov/MEG/ClubMEG_Carver&Stout_MNE&AFNI-GroupAnalysisTutorial_012122.mp4 Recording Download (mp4)] |
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*Jeff Stout, [[MNE Python Tutorial 2021]] -- Introduction to MEG processing with MNE Python |
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*NIMH MEG Core Staff, [[NIH MEG Short Course 2018]] -- Useful training materials. |
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== Special Interest Groups == |
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[https://megcore.nih.gov/index.php?title=Machine_Learning_SIG '''Machine Learning Special Interest Group'''] (ML SIG) - 4th Friday of every month 1-2pm. Contact Jeff Stout for more information on joining or presenting.</br> |
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'''''Prior ML SIG topics:''''' |
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* '''05/27/2022''' Jeff Stout - [https://www.sciencedirect.com/science/article/pii/S1053811921006777 MEGnet: Automatic ICA-based artifact removal for MEG using spatiotemporal convolutional neural networks] |
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**[https://megcore.nih.gov/MEG/JeffStout_MEGnetOverview_ML-SIG_05292022.mp4 Recording Download (mp4)] |
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*'''04/15/2022''' Leonardo Claudino - Decoding Pipeline <ref> https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay Ethan R. Buch, Leonardo Claudino, Romain Quentin, Marlene Bönstrup, Leonardo Cohen</ref><ref>https://github.com/hcps-ninds/Replay ANALYSIS CODE: Consolidation of human skill linked to waking hippocampo-neocortical replay </ref> |
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** [https://megcore.nih.gov/MEG/LeoClaudino_DecodingPipeline_MEG-ML-SIG_04152022.mp4 Recording Download (mp4)] |
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*'''03/25/2022''' Mina Kheirkhah Rahimabadi - Classification of brain responses to emotional image stimuli measured with MEG |
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*'''03/04/2022''' Dave Dash - Decoding speech with MEG <ref>Dash D, Ferrari P, Wang J. Decoding Imagined and Spoken Phrases From Non-invasive Neural (MEG) Signals. Front Neurosci. 2020;14:290. Published 2020 Apr 7. doi:10.3389/fnins.2020.00290</ref> <ref>Dash D, Wisler A, Ferrari P, Davenport EM, Maldjian J, Wang J. MEG Sensor Selection for Neural Speech Decoding. IEEE Access. 2020;8:182320-182337. doi:10.1109/access.2020.3028831</ref> <ref>Dash D, Ferrari P, Dutta S, Wang J. NeuroVAD: Real-Time Voice Activity Detection from Non-Invasive Neuromagnetic Signals. Sensors (Basel). 2020;20(8):2248. Published 2020 Apr 16. doi:10.3390/s20082248</ref> |
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**[https://megcore.nih.gov/MEG/DebadattaDash_MEG-SpeechDecoding_ClubMEG_03042022.mp4 Recording Download (mp4)] |
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*'''01/28/2022''' Lina Teichmann - Bayes Factors for Time-series Decoding |
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**[https://megcore.nih.gov/MEG/Teichmann_MEGMachineLearningSIG_BayesFactorsTimeSeriesDecoding_01282022.mp4 Teichmann 01/28/22 Recording Download (mp4)] |
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** Slides: [[File:Pdf.png|PDF]] [https://megcore.nih.gov/MEG/Teichmann_BayesFactors_ClubMEG_01282022.pdf Bayes Factors for Time-Series Decoding] |
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** [https://www.biorxiv.org/content/10.1101/2021.06.23.449663v3.abstract Journal Article] and [https://github.com/LinaTeichmann1/BFF_repo Associated Code] |
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*'''12/03/2021''' Initial meeting for Machine Learning in MEG SIG - Journal Club discussion: [https://pubmed.ncbi.nlm.nih.gov/28782682/ Deconstructing multivariate decoding for the study of brain function] |
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==References== |
Latest revision as of 10:47, 5 December 2024
Club MEG is our version of a journal club. We welcome NIH MEG researchers to lead discussions on any MEG topic, including interesting papers, experiment ideas, analysis techniques, or finding from your research.
Interested in presenting a topic? Email Fred Carver at carverf@nih.gov or Jeff Stout at stoutjd@nih.gov if you would like to present.
Notifications of upcoming talks are sent to the MEG_ANNOUNCE (NIH MEG Core Users only) and Club-MEG_ANNOUNCE listservs.
Upcoming Talks/Discussions
- 12/20/2024
- Prabhakararao Eedara
- Amaia Benitez Andonegui
- 1/**/2024
- Ryan Oakeson - Recap Speech In Noise (SPIN) Workshop
- 3/**/2025
- Alexis Kidder
- *spring*/**/2025
- Advanced Topics Short Course
- Connectivity
- Decoding
- Naturalistic Viewing Analysis
- Microstates
- Advanced Topics Short Course
Other notable dates:
OHBM: 06/(23 - 27)/2024
BIOMAG 08/(26 – 29)/2024
Possible DC Brainhack --/--/2024
Recent Talks/Discussions
- 11/18-19/2024
- MEG Beginner Short Course - "Squid School"
- 11/01/2024
- 10/23/2024 1:30 - NMR Conf Room
- John Hale - Modeling fMRI time courses with linguistic structure
- 10/18/2024
- Jeff Stout - BIDS QA GUI Demo
- 10/04/2024
- 08/02/2024
- Jeff Stout, GUI demo for BIDS creation and additional processing (email Jeff for slides and further information)
- 08/15/2024
- Allison Nugent, fMRI Summer Course: Magnetoencephalography lecture
- 07/12/2024
- 06/21/2024 1-2pm
- Sebastian Montesinos, How face perception unfolds over time, Dobs et al. (2019)
- Jeff Stout, Alpha oscillations do not implement gain control in early visual cortex but rather gating in parieto-occipital regions
- 06/14/2024 1-2pm
- Peter Krueger, NMR Conference Room (and on Zoom)
- 05/24/2024 at 11:00am FAES classrooms Building 10
- Tijl Grootswagers : Seeing in a Flash: Neural Decoding of Rapid Object Recognition
- 05/24/2024 at 1:00pm 2X Journal Article
- Lucrezia Liuzzi, "Towards a more robust non-invasive assessment of functional connectivity "
- Anna Namyst, "Hierarchical dynamic coding coordinates speech comprehension in the brain" Gwilliams et al. (*preprint)
- 04/19/2024 at 1:00pm 2X Journal Article
- 03/08/2024 at 1:00pm 2X Journal Article
- 02/23/2024 Yoojin Lee - Dysregulated connectivity among insula, postcentral gyrus, and precuneus and its association with suicide risk
- 02/16/2024 2X Journal Article
- 01/26/2024 Megan Parker - A smartphone delivered attention retraining intervention for altering neural underpinnings of food attention bias in adolescent girls with overweight or obesity
- 11/08/2023-11/09/2023 MEG North America (at NIH campus) - https://megcore.nih.gov/index.php/MEG_North_America_Workshop
- 10/20/2023 Club MEG: (Multi-Presenter: 3x 15min talks)
- Elena Hayday
- Pei Robins
- Amy Xu
- 09/27(Wednesday) & 10/04/2023(Wednesday)
- 08/18/2023 Arshitha Basavaraj and Jeff Stout - Curating / Uploading / Editing / Versioning MEG BIDS data for OpenNeuro
- 08/04/2023 Sue Tong and Daniel Eisenberg - Schizophrenia, antipsychotic treatment, and cortical function
- 07/28/2023 Riley Hochstein - Magnetocardiography with OPMs
- 06/30/2023 Club MEG: (Multi-Presenter: 3x 15min talks)
- Sebastian Montesinos
- Miguel Jaime
- Bess Bloomer
- 05/19/2023 Club MEG: (Multi-Presenter: 3X 15min talks)
- Angela Wang
- Price Withers
- Kaya Scheman
- 05/12/2023 Christian Brodbeck (University of Connecticut) - Eelbrain Software Demonstration (for neurophysiological statistics)
- 05/05/2023 -- MEG Hackathon 2023
- 04/28/2023 at 1:00pm Club MEG: Abbas Babajani-Feremi - (University of Florida) - MEG Presurgical Language Mapping Using a Novel Automatic Equivalent Current Dipole Algorithm (AsECDa) in Comparison with MNE, dSPM, and DICS Beamformer
- 04/21/2023 at 1:00pm Hackathon Prep -- Go over ideas and best practices - setup git repos for the project.
- 03/03/2023 Graham Flick (New York University) - Visual word recognition in natural reading: A co-registered MEG and eye-tracking study
- 02/24/2023 Georgios Michalareas (Max Planck Institute) - Alpha-Beta and Gamma Rhythms Subserve Feedback and Feedforward Influences among Human Visual Cortical Areas
- 02/03/2023 Lina Teichman and Amaia Benitez Andonegui - The temporal evolution of colour-space geometries in the human brain
- 01/27/2023 Lucrezia Liuzzi - Identifying markers of cognitive control
- 12/09/2022 Ryan Oakeson and Amaia Benitez, Top-down information flow drives lexical access when listening to continuous speech
- 12/02/2022 Anna Namyst, Establishing New Mappings between Familiar Phones: Neural and Behavioral Evidence for Early Automatic Processing of Nonnative Contrasts
- 10/28/2022 - Sharif Kronemer - "The neural mechanisms of afterimages: A model of illusory conscious perception"
- 10/07/2022 - Sarah Grewal - On-Scalp Optically Pumped Magnetometers versus Cryogenic Magnetoencephalography for Diagnostic Evaluation of Epilepsy in School-aged Children (Journal Article)
- 09/16/2022 Lindsay Oberman - Autism background, MEG autism biomarkers, interventional approach, and preliminary study results
- 09/15/2022 Biomag 2022 Recap
- 08/19/2022 Kunjan Rana - Communication Between the Amygdala and Cortex in the Context of Face Processing
- 08/05/2022 Shruti Japee - Temporal Dynamics of Facial Expression Processing
- 05/20/2022 Priyanka Shah (Medical College of Wisconsin) - Resting Connectivity Changes in Temporal Lobe Epilepsy
- 05/13/2022 Jess Gilbert - MEG Studies of Treatment-Resistant Depression and Ketamine Response
- 04/29/2022 Ethan Buch Consolidation of human skill linked to waking hippocampo-neocortical replay
- 04/08/2022 Allison Nugent Temporal hierarchy of intrinsic neural timescales converges with spatial core-periphery organization
- 03/10/2022 Stephen Robinson - Using Information Theory for MEG Studies
- 02/11/2022 Megan Parker - Neural regulatory mechanism of desire for food: revealed by magnetoencephalography (article)
- 11/12/2021 Amaia Benitez, From ECoG to Magnetocorticography: Optically Pumped Magnetometers for Non-Invasive, High Resolution Imaging
- 10/22/2021 Stephen Robinson, Fundamentals of Beamformers (mp4)
- 10/23/2020 Angela Wang and Tom Holroyd, Neurofeedback Discussion.
- Slides: Neurofeedback Review; Real-time Beamforming.
Previous Tutorials and Training
- Jeff Stout (02/17/2023) - Making python modules
- Jeff Stout (10/21/2022) - MNE_BIDS/MNE_BIDS_PIPELINE/Biowulf MEG Bids Modules
- Recording Download (mp4)
- Slides
- mne-bids example usage
- Additional Info (referenced in video): https://megcore.nih.gov/index.php/Mne_bids_pipeline
- John Veillette, University of Chicago (10/14/2022) - MNE-ARI (All Resolutions Imaging) Theoretical Overview and Demo
- Tom Holroyd (09/30/2022) - Demonstration of SAM beamforming using Sequential Regression (SER) covariance updating for real-time analysis
- Anna Namyst and Jeff Stout (09/09/2022) - Eye Tracking Overview
- Group Session (08/12/2022) - Connectivity Coding Zoom Call Meg_information_based_connectivity_coding_session
- Andrea Brovelli & Etienne Combrisson, Institut de Neurosciences de la Timone (07/13/2022) - FRITES Theoretical Overview and Demo (Connectivity Calculation and Stats)
- MEG Hackathon 05/06/2022
- Eric Earl (04/27/2022) - Github Presentation and Discussion
- Jeff Stout, Intro to Git, 04/12/2022 -
- Jeff Stout, Intro Python, 03/29/2022 - Dictionaries/Functions/Scripts/Modules/commandline interface -- Recording Download (mp4)
- Fred Carver & Jeff Stout, Tutorial Link (01/21/22) -- MEG Group Data Analysis in AFNI and MNE Python
- Jeff Stout, MNE Python Tutorial 2021 -- Introduction to MEG processing with MNE Python
- NIMH MEG Core Staff, NIH MEG Short Course 2018 -- Useful training materials.
Special Interest Groups
Machine Learning Special Interest Group (ML SIG) - 4th Friday of every month 1-2pm. Contact Jeff Stout for more information on joining or presenting.
Prior ML SIG topics:
- 05/27/2022 Jeff Stout - MEGnet: Automatic ICA-based artifact removal for MEG using spatiotemporal convolutional neural networks
- 04/15/2022 Leonardo Claudino - Decoding Pipeline [1][2]
- 03/25/2022 Mina Kheirkhah Rahimabadi - Classification of brain responses to emotional image stimuli measured with MEG
- 03/04/2022 Dave Dash - Decoding speech with MEG [3] [4] [5]
- 01/28/2022 Lina Teichmann - Bayes Factors for Time-series Decoding
- 12/03/2021 Initial meeting for Machine Learning in MEG SIG - Journal Club discussion: Deconstructing multivariate decoding for the study of brain function
References
- ↑ https://www.sciencedirect.com/science/article/pii/S2211124721005398?via%3Dihub Consolidation of human skill linked to waking hippocampo-neocortical replay Ethan R. Buch, Leonardo Claudino, Romain Quentin, Marlene Bönstrup, Leonardo Cohen
- ↑ https://github.com/hcps-ninds/Replay ANALYSIS CODE: Consolidation of human skill linked to waking hippocampo-neocortical replay
- ↑ Dash D, Ferrari P, Wang J. Decoding Imagined and Spoken Phrases From Non-invasive Neural (MEG) Signals. Front Neurosci. 2020;14:290. Published 2020 Apr 7. doi:10.3389/fnins.2020.00290
- ↑ Dash D, Wisler A, Ferrari P, Davenport EM, Maldjian J, Wang J. MEG Sensor Selection for Neural Speech Decoding. IEEE Access. 2020;8:182320-182337. doi:10.1109/access.2020.3028831
- ↑ Dash D, Ferrari P, Dutta S, Wang J. NeuroVAD: Real-Time Voice Activity Detection from Non-Invasive Neuromagnetic Signals. Sensors (Basel). 2020;20(8):2248. Published 2020 Apr 16. doi:10.3390/s20082248