Pyctf - Revision history

Tomh at 20:48, 23 September 2020

2020-09-23T20:48:12Z

@@ Line 1: / Line 1: @@
-'''pyctf''' is a Python module that allows access to CTF MEG datasets. It contains numerous Python functions and stand alone utilities to help automate your data analysis. Parts of it are written in C, compatible with Py2 and Py3.
+'''pyctf''' is a Python module that allows access to CTF MEG datasets. It contains numerous Python functions and stand-alone utilities to help automate your data analysis. Parts of it are written in C, compatible with Py2 and Py3.
 The latest version (released 20200923) is available here: [https://megcore.nih.gov/MEG/pyctf.tgz pyctf.tgz]
@@ Line 5: / Line 5: @@
 See the included INSTALL file for installation instructions.
   module load fftw/3.3.8/openmpi-4.0.1/gcc-9.2.0
@@ Line 14: / Line 16: @@
 == Included Utilities ==
-| Usage: thresholdDetect.py [options] dataset.ds
+* delMarker.py deletes a named mark from a dataset.

Tomh at 20:17, 23 September 2020

2020-09-23T20:17:06Z

← Older revision		Revision as of 16:17, 23 September 2020
Line 1:		Line 1:
	'''pyctf''' is a Python module that allows access to CTF~~-format~~ MEG datasets.		'''pyctf''' is a Python module that allows access to CTF MEG datasets. It contains numerous Python functions and stand alone utilities to help automate your data analysis. Parts of it are written in C, compatible with Py2 and Py3.
	It contains numerous Python functions and stand alone tools to help automate your data analysis. Parts of it are written in C, compatible with Py2 and Py3.

	The latest version (~~release~~ 20200923) is available here: [https://megcore.nih.gov/MEG/pyctf.tgz pyctf.tgz]		The latest version (released 20200923) is available here: [https://megcore.nih.gov/MEG/pyctf.tgz pyctf.tgz]

	See the included INSTALL file for installation instructions.		See the included INSTALL file for installation instructions.

			== For biowulf.nih.gov ==

		⚫	# Requires gcc and fftw
	If on biowulf:
⚫	#Requires gcc and fftw
	module load fftw/3.3.8/openmpi-4.0.1/gcc-9.2.0		module load fftw/3.3.8/openmpi-4.0.1/gcc-9.2.0

	#Then follow the instructions in the INSTALL file		Then follow the instructions in the INSTALL file.

	=== ~~Utilities~~ ~~included~~ ===		== Included Utilities ==

	* thresholdDetect.py is used to detect changes in ADC or other channels, indicating the onset time of stimuli or other events; typically used to detect button presses in the ADC channels.		* thresholdDetect.py is used to detect changes in ADC or other channels, indicating the onset time of stimuli or other events; typically used to detect button presses in the ADC channels.

Tomh at 20:10, 23 September 2020

2020-09-23T20:10:16Z

← Older revision		Revision as of 16:10, 23 September 2020
Line 1:		Line 1:
	~~Pyctf~~ is a Python module that allows access to CTF-format MEG datasets.		'''pyctf''' is a Python module that allows access to CTF-format MEG datasets.
			It contains numerous Python functions and stand alone tools to help automate your data analysis. Parts of it are written in C, compatible with Py2 and Py3.

	The latest version is available here: [https://megcore.nih.gov/MEG/pyctf.tgz pyctf.tgz]		The latest version (release 20200923) is available here: [https://megcore.nih.gov/MEG/pyctf.tgz pyctf.tgz]

	See the INSTALL file for installation instructions.		See the included INSTALL file for installation instructions.


Line 11:		Line 12:

	#Then follow the instructions in the INSTALL file		#Then follow the instructions in the INSTALL file

			=== Utilities included ===

			* thresholdDetect.py is used to detect changes in ADC or other channels, indicating the onset time of stimuli or other events; typically used to detect button presses in the ADC channels.
			: {\| width=400 style="border: 1px solid lightgrey;"
			\| Usage: thresholdDetect.py [options] dataset.ds
			\|}

			* parsemarks is a python script that prints marker information from the MarkerFile.mrk in your .ds dataset directory, and can perform various processing on the marks. Running parsemarks with no arguments produces a detailed usage message.

Jstout at 21:18, 21 September 2020

2020-09-21T21:18:54Z

← Older revision		Revision as of 17:18, 21 September 2020
Line 8:		Line 8:
	If on biowulf:		If on biowulf:
	#Requires gcc and fftw		#Requires gcc and fftw
	module load ~~module load gcc~~/7.4.0 openmpi/4.0.4/gcc-7.4.0		module load fftw/3.3.8/openmpi-4.0.1/gcc-9.2.0
	module load fftw/3.3.8/openmpi-4.0.4/gcc-7.4.0

	#Then follow the instructions in the INSTALL file		#Then follow the instructions in the INSTALL file

Jstout at 20:48, 21 September 2020

2020-09-21T20:48:18Z

← Older revision		Revision as of 16:48, 21 September 2020
Line 4:		Line 4:

	See the INSTALL file for installation instructions.		See the INSTALL file for installation instructions.


			If on biowulf:
			#Requires gcc and fftw
			module load module load gcc/7.4.0 openmpi/4.0.4/gcc-7.4.0
			module load fftw/3.3.8/openmpi-4.0.4/gcc-7.4.0

			#Then follow the instructions in the INSTALL file

Tomh at 19:23, 21 September 2020

2020-09-21T19:23:55Z

← Older revision		Revision as of 15:23, 21 September 2020
Line 2:		Line 2:

	The latest version is available here: [https://megcore.nih.gov/MEG/pyctf.tgz pyctf.tgz]		The latest version is available here: [https://megcore.nih.gov/MEG/pyctf.tgz pyctf.tgz]

			See the INSTALL file for installation instructions.

Tomh at 16:32, 4 April 2020

2020-04-04T16:32:00Z

← Older revision		Revision as of 12:32, 4 April 2020
Line 1:		Line 1:
	Pyctf is a Python module that allows access to CTF-format MEG datasets.		Pyctf is a Python module that allows access to CTF-format MEG datasets.

			The latest version is available here: [https://megcore.nih.gov/MEG/pyctf.tgz pyctf.tgz]

Tomh: Created page with "Pyctf is a Python module that allows access to CTF-format MEG datasets."

2020-04-04T16:27:02Z

Created page with "Pyctf is a Python module that allows access to CTF-format MEG datasets."

New page

Pyctf is a Python module that allows access to CTF-format MEG datasets.