Organizing an MEG project - Revision history

Jstout: Jstout moved page Standard analysis design steps to Organizing an MEG project

2025-01-31T15:03:50Z

Jstout moved page Standard analysis design steps to Organizing an MEG project

← Older revision	Revision as of 11:03, 31 January 2025
(No difference)

Jstout: /* Describe Your Hypothesis About The Results */

2025-01-31T15:02:32Z

Describe Your Hypothesis About The Results

← Older revision		Revision as of 11:02, 31 January 2025
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	Timing - Prior literature has shown that <br>		Timing - Prior literature has shown that <br>

	=Add Markerfile information / Oragnize Data / QA Data		=Add Markerfile information / Oragnize Data / QA Data=
	[[https://megcore.nih.gov/index.php/BIDS_GUIs \| BIDS GUI information]]		[[https://megcore.nih.gov/index.php/BIDS_GUIs BIDS GUI information]]

Jstout at 15:01, 31 January 2025

2025-01-31T15:01:41Z

← Older revision		Revision as of 11:01, 31 January 2025
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	UNDER CONSTRUCTION <br>

	Below are some general guidelines that help you analyze your data<br>		Below are some general guidelines that help you analyze your data<br>
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	Timing - Prior literature has shown that <br>		Timing - Prior literature has shown that <br>

			=Add Markerfile information / Oragnize Data / QA Data
	=Develop code to write the triggers to your MEG dataset=
			[[https://megcore.nih.gov/index.php/BIDS_GUIs \| BIDS GUI information]]
	Python Dataframe Based:
	examples: https://github.com/nih-megcore/hv_proc/tree/main/hv_proc/Process_scripts
	requires nih2mne: https://github.com/nih-megcore/nih_to_mne.git
	Commandline Based:
	requires pyctf: https://github.com/nih-megcore/pyctf OR https://github.com/nih-megcore/pyctf-lite)



	==Run the

Jstout at 15:05, 12 December 2024

2024-12-12T15:05:27Z

← Older revision		Revision as of 11:05, 12 December 2024
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	=Create a github page of the project=		=Create a github page of the project=
	Sign up for a github account: github.com <br>		Sign up for a github account: github.com <br>
	Create a github page of the project. Try to give it a reasonably focused name and NOT just Data_Analysis. This type of setup is often required for publication and can be very helpful in the understanding of the study for reproducibility.		Create a github page of the project - this page can initially be a private repository if you prefer. Try to give it a reasonably focused name and NOT just Data_Analysis. This type of setup is often required for publication and can be very helpful in the understanding of the study for reproducibility. This excercise is very important in thinking about your end goal - otherwise your data analysis can become a wandering mess. Below are some things that are very helpful to put on a data analysis repository.
	==Describe the data acquisition task by task==		==Describe the data acquisition task by task==
	Auditory M100 task:		Auditory M100 task:

Jstout: /* Create a github page of the project */

2024-12-12T15:02:21Z

Create a github page of the project

← Older revision		Revision as of 11:02, 12 December 2024
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	=Create a github page of the project=		=Create a github page of the project=
	github.com		Sign up for a github account: github.com <br>
			Create a github page of the project. Try to give it a reasonably focused name and NOT just Data_Analysis. This type of setup is often required for publication and can be very helpful in the understanding of the study for reproducibility.
	==Describe the data acquisition task by task==		==Describe the data acquisition task by task==
	Auditory M100 task:		Auditory M100 task:

Jstout at 19:01, 11 December 2024

2024-12-11T19:01:35Z

← Older revision		Revision as of 15:01, 11 December 2024
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	=Develop code to write the triggers to your MEG dataset=		=Develop code to write the triggers to your MEG dataset=
	Python Dataframe Based: ~~<br>~~		Python Dataframe Based:
	examples: https://github.com/nih-megcore/hv_proc/tree/main/hv_proc/Process_scripts ~~<br>~~		examples: https://github.com/nih-megcore/hv_proc/tree/main/hv_proc/Process_scripts
	requires nih2mne: https://github.com/nih-megcore/nih_to_mne.git ~~<br>~~		requires nih2mne: https://github.com/nih-megcore/nih_to_mne.git
	Commandline Based: ~~<br>~~		Commandline Based:
	requires pyctf: https://github.com/nih-megcore/pyctf OR https://github.com/nih-megcore/pyctf-lite)		requires pyctf: https://github.com/nih-megcore/pyctf OR https://github.com/nih-megcore/pyctf-lite)

Jstout at 18:59, 11 December 2024

2024-12-11T18:59:51Z

← Older revision		Revision as of 14:59, 11 December 2024
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	==If your logfile incorporates special data that is not in your meg dataset - list these entries==		==If your logfile incorporates special data that is not in your meg dataset - list these entries==
			The logfile codes out ...

	==If there is external data that is collected - describe how this will be incorporated with the data==		==If there is external data that is collected - describe how this will be incorporated with the data==
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	=Describe Your Hypothesis About The Results=		==Describe Your Hypothesis About The Results==
	We expect to see activation in the left dorsolateral prefrontal area		We expect to see activation in the left dorsolateral prefrontal area <br>
	Timing - Prior literature has shown that		Timing - Prior literature has shown that <br>

			=Develop code to write the triggers to your MEG dataset=
			Python Dataframe Based: <br>
			examples: https://github.com/nih-megcore/hv_proc/tree/main/hv_proc/Process_scripts <br>
			requires nih2mne: https://github.com/nih-megcore/nih_to_mne.git <br>
			Commandline Based: <br>
			requires pyctf: https://github.com/nih-megcore/pyctf OR https://github.com/nih-megcore/pyctf-lite)



			==Run the

Jstout at 18:20, 11 December 2024

2024-12-11T18:20:07Z

← Older revision		Revision as of 14:20, 11 December 2024
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	==For each task describe the auxilliary channels:==		==For each task describe the auxilliary channels:==
	UADC001 was used for left hand patient responses		UADC001 was used for left hand patient responses
	UADC002 was used for right hand patient responses		UADC002 was used for right hand patient responses
	UADC016 was used for the projector channel to correct for timing delays		UADC016 was used for the projector channel to correct for timing delays
			UPPT001 codes the stimuli values

			===Describe what each PPT value codes===
			2: congruent word stimuli
			4: incongruent word stimuli
			6: distractor words
			8: high noise condition
			....

	==If your logfile incorporates special data that is not in your meg dataset - list these entries==		==If your logfile incorporates special data that is not in your meg dataset - list these entries==

Jstout at 17:58, 11 December 2024

2024-12-11T17:58:27Z

@@ Line 1: / Line 1: @@
-UNDER CONSTRUCTION
+UNDER CONSTRUCTION <br>
 =Create a github page of the project=
@@ Line 19: / Line 23: @@
 ==If there is external data that is collected - describe how this will be incorporated with the data==
 External camera data was used to judge facial expressions.  Timing triggers were sent to the

Jstout: Created page with "UNDER CONSTRUCTION =Create a github page of the project= github.com ==Describe the data acquisition task by task== Auditory M100 task: Tone burst auditory stimuli were delivered bilaterally to the subject using the .... Somatosensory task: Pneumatic stimulation was performed on the index finger at a rate of approximately 2 times per second with a jitter of 20 ms ... ==For each task describe the auxilliary channels:== UADC001 was used for left hand patient response..."

2024-12-11T17:53:04Z

Created page with "UNDER CONSTRUCTION =Create a github page of the project= github.com ==Describe the data acquisition task by task== Auditory M100 task: Tone burst auditory stimuli were delivered bilaterally to the subject using the .... Somatosensory task: Pneumatic stimulation was performed on the index finger at a rate of approximately 2 times per second with a jitter of 20 ms ... ==For each task describe the auxilliary channels:== UADC001 was used for left hand patient response..."

New page

UNDER CONSTRUCTION

=Create a github page of the project=
github.com
==Describe the data acquisition task by task==
Auditory M100 task:
Tone burst auditory stimuli were delivered bilaterally to the subject using the ....

Somatosensory task:
Pneumatic stimulation was performed on the index finger at a rate of approximately 2 times per second with a jitter of 20 ms ...

==For each task describe the auxilliary channels:==
UADC001 was used for left hand patient responses
UADC002 was used for right hand patient responses
UADC016 was used for the projector channel to correct for timing delays

==If your logfile incorporates special data that is not in your meg dataset - list these entries==

==If there is external data that is collected - describe how this will be incorporated with the data==
External camera data was used to judge facial expressions. Timing triggers were sent to the