Healthy Volunteer Protocol - Revision history

Jstout: /* Information on Tasks */

2020-05-22T20:27:14Z

Information on Tasks

← Older revision		Revision as of 16:27, 22 May 2020
Line 62:		Line 62:
	1 Go		1 Go
	2 Nogo		2 Nogo

			===Sternberg Task===
			A two level working memory task with either 4 or 6 letters visually presented to the subject in a single encode stimuli. A subsequent probe slide has a single letter that the subject will respond with the left response (UADC00--) if the probe letter is in the original encode set or (UADC00--) if the subject believes that the probe letter was not in the origal encode set.

Jstout: /* Information on Tasks */

2020-05-20T12:58:00Z

Information on Tasks

← Older revision		Revision as of 08:58, 20 May 2020
Line 54:		Line 54:
	sadmale,0x15		sadmale,0x15
	sadfem,0x16		sadfem,0x16

			===Go / NoGo ===
			A series of words are presented on the screen with ..........


			Stimulus Trigger Codes (UPPT001)
			1 Go
			2 Nogo

Jstout: /* Datasets */

2020-05-12T15:09:52Z

Datasets

← Older revision		Revision as of 11:09, 12 May 2020
Line 16:		Line 16:
	*Sternberg: Working memory task with 4 and 6 letter memory items presented visually		*Sternberg: Working memory task with 4 and 6 letter memory items presented visually
	*Hariri: Modified hariri hammer emotional processing task with positive and negative facial emotions and a subsequent emotional match		*Hariri: Modified hariri hammer emotional processing task with positive and negative facial emotions and a subsequent emotional match
	*Movie: "Growth" (Groei) https://www.imdb.com/title/tt6386160/		*Movie: Naturalistic viewing task - "Growth" (Groei) https://www.imdb.com/title/tt6386160/
	*Resting: Eyes closed resting state		*Resting: Eyes closed resting state
	*Oddball: Auditory oddball identification task with standard tone, oddball target tone, and white noise distractor tone		*Oddball: Auditory oddball identification task with standard tone, oddball target tone, and white noise distractor tone
Line 22:		Line 22:

	====Trigger Coding====		====Trigger Coding====

	===Oddball Task===		===Oddball Task===
	Description: 3 sound stimuli presented to the participant. The participant attends to the "standard" tone stimuli (210 epochs) and is required to respond to the "target" tone stimuli (45 epochs) that are intermixed with the standard tone. Additionally a broadband noise stimuli is presented as a "distractor" stimuli (45 epochs).		Description: 3 sound stimuli presented to the participant. The participant attends to the "standard" tone stimuli (210 epochs) and is required to respond to the "target" tone stimuli (45 epochs) that are intermixed with the standard tone. Additionally a broadband noise stimuli is presented as a "distractor" stimuli (45 epochs).

Jstout at 15:08, 12 May 2020

2020-05-12T15:08:52Z

@@ Line 1: / Line 1: @@
-====Healthy Volunteer Protocol - MEG component====
+=Healthy Volunteer Protocol - MEG component=
 This large scale study is being conducted to collect MEG on a large number of healthy controls with matched MRI/fMRI data
 The study is described in full detail in the manuscript: __Enter Link Here__
 Data triggers are cleaned using several routines listed below.  These have been used to realign stimulus triggers to optical onset of the projector.  Datasets that have logfiles have been merged
 with the trigger data to label triggers and responses.
   https://megcore.nih.gov/index.php/Healthy_Volunteer_Protocol_Upload_Process
 ====Trigger Coding====
@@ Line 63: / Line 53: @@
   sadmale,0x15
   sadfem,0x16

Jstout: /* BIDS format / OpenNeuro */

2020-05-12T13:53:28Z

BIDS format / OpenNeuro

← Older revision		Revision as of 09:53, 12 May 2020
Line 16:		Line 16:
	Data triggers are cleaned using several routines listed below. These have been used to realign stimulus triggers to optical onset of the projector. Datasets that have logfiles have been merged		Data triggers are cleaned using several routines listed below. These have been used to realign stimulus triggers to optical onset of the projector. Datasets that have logfiles have been merged
	with the trigger data to label triggers and responses.		with the trigger data to label triggers and responses.

			More details can be seen at:
			https://megcore.nih.gov/index.php/Healthy_Volunteer_Protocol_Upload_Process

	====Code====		====Code====

Amnamyst: /* Datasets */

2020-05-01T17:39:15Z

Datasets

← Older revision		Revision as of 13:39, 1 May 2020
Line 10:		Line 10:
	*Resting State - Eyes closed		*Resting State - Eyes closed
	*Auditory Oddball		*Auditory Oddball
			*Go/No-go
	*Airpuff

	====BIDS format / OpenNeuro====		====BIDS format / OpenNeuro====

Amnamyst: /* Datasets */

2020-05-01T17:38:11Z

Datasets

← Older revision		Revision as of 13:38, 1 May 2020
Line 10:		Line 10:
	*Resting State - Eyes closed		*Resting State - Eyes closed
	*Auditory Oddball		*Auditory Oddball
			*Airpuff

	====BIDS format / OpenNeuro====		====BIDS format / OpenNeuro====

Jstout at 16:42, 30 April 2020

2020-04-30T16:42:22Z

← Older revision		Revision as of 12:42, 30 April 2020
Line 19:		Line 19:
	pyctf - core interface to CTF processing in python. Includes general bids related functions as well as general purpose MEG processing and MEG/MRI alignment.		pyctf - core interface to CTF processing in python. Includes general bids related functions as well as general purpose MEG processing and MEG/MRI alignment.
	hv_proc - Scripts for bids creation and QA of the datasets		hv_proc - Scripts for bids creation and QA of the datasets

			====Processing on Biowulf====
			To process the scripts on biowulf:
			pyctf & hv_proc must be in your conda path (if necessary add filepaths to a .pth file in the conda site-packages folder)
			module load ctf
			module load afni


	====Trigger Coding====		====Trigger Coding====

Jstout: /* Healthy Volunteer Protocol - MEG component */

2020-04-30T16:39:39Z

Healthy Volunteer Protocol - MEG component

← Older revision		Revision as of 12:39, 30 April 2020
Line 1:		Line 1:
	====Healthy Volunteer Protocol - MEG component====		====Healthy Volunteer Protocol - MEG component====
	This large scale study is being conducted to collect MEG on a large number of healthy controls with matched MRI/fMRI data		This large scale study is being conducted to collect MEG on a large number of healthy controls with matched MRI/fMRI data
			The study is described in full detail in the manuscript: __Enter Link Here__

	====Datasets====		====Datasets====

Jstout: Oddball Task Added

2020-04-30T16:37:08Z

Oddball Task Added

← Older revision		Revision as of 12:37, 30 April 2020
Line 6:		Line 6:
	*Sternberg working memory		*Sternberg working memory
	*Hariri hammer		*Hariri hammer
	*Movie - (Groei) https://www.imdb.com/title/tt6386160/		*Movie - "Growth" (Groei) https://www.imdb.com/title/tt6386160/
	*Resting State - Eyes closed		*Resting State - Eyes closed
	*Auditory Oddball		*Auditory Oddball
Line 15:		Line 15:
	with the trigger data to label triggers and responses.		with the trigger data to label triggers and responses.

			====Code====

			pyctf - core interface to CTF processing in python. Includes general bids related functions as well as general purpose MEG processing and MEG/MRI alignment.
			hv_proc - Scripts for bids creation and QA of the datasets

	====Trigger Coding====		====Trigger Coding====
			===Oddball Task===
			Description: 3 sound stimuli presented to the participant. The participant attends to the "standard" tone stimuli (210 epochs) and is required to respond to the "target" tone stimuli (45 epochs) that are intermixed with the standard tone. Additionally a broadband noise stimuli is presented as a "distractor" stimuli (45 epochs).
			UADC003 - Left Ear auditory stimuli
			UADC004 - Right Ear auditory stimuli
			UADC005 - Participant response
			UPPT001 - Stimuli Coding (standard:1, target:2, distractor:3)

	===Hariri Hammer===		===Hariri Hammer===
	Emotional processing task contrasting happy and sad faces. Shapes are used as neutral baselines. An initial "top stim" will be shown followed by a fixation crosshair. The subject is supposed to respond during the "choice stim" by pressing the left or right response button that corresponds to the face matching the "top stim" presentation.		Emotional processing task contrasting happy and sad faces. Shapes are used as neutral baselines. An initial "top stim" will be shown followed by a fixation crosshair. The subject is supposed to respond during the "choice stim" by pressing the left or right response button that corresponds to the face matching the "top stim" presentation.