Club MEG

2021-11-02T15:09:44Z

Tomh:

Club MEG

2021-11-02T15:08:42Z

Tomh:

Lab Status

2021-11-02T15:02:55Z

Tomh:

==Live cam of the MEG Core console (NIH access only)==

https://kurage.nimh.nih.gov/nih/megcam.jpg

{| width=512 style="border: 1px solid grey;"
| Image updated every 5 minutes.
|}

'''The main MEG lab phone number is (301)402-2445.'''

Helpful Links

2021-11-02T13:47:30Z

Tomh:

==== Helpful Links ====

* Researchers at NIH should join the [https://list.nih.gov/cgi-bin/wa.exe?A0=meg_announce MEG_ANNOUNCE] listserv

* Anyone interested in MEG should check out [http://megcommunity.org/ MEG Community], and join their mailing list.

* [http://afni.nimh.nih.gov AFNI] is an essential tool for utilizing the SAM pipeline.

* [https://surfer.nmr.mgh.harvard.edu/ Freesurfer] is another essential tool for incorporating anatomical MRI data in your analysis.

* Consider joining the [https://www.humanbrainmapping.org Organization for Human Brain Mapping]

* Attend a [https://biomag2020.org/ BioMag] meeting

* [https://megcore.nih.gov/index.php/OpenAccess_MEG Open Access MEG datasets]

==== Notes for Mediawiki Editors ====
----
* To embed a Microsoft Word document (.doc or .docx) in your wikitext, use the following syntax.
<nowiki>
[[Image:word.png]] [[Media:Octave_Simple_File_I_O.docx| GNU Octave Simple File IO]]
</nowiki>
This will format as follows:

[[Image:word.png]] [[Media:Octave_Simple_File_I_O.docx| GNU Octave Simple File IO]]
----
* To embed an Adobe pdf document in your wikitext, use the following syntax.
<nowiki>
Some important review articles articles on MEG research.
[[Image:pdf.png]] [[Media:1993-Hamalainen-RMP.pdf| Reviews of Modern Physics Paper, 1993]]

[[Image:pdf.png]] [[Media:2003EncycNeuroSci.pdf| Magnetoencephalography, from the Encyclopedia of Neuroscience, 2003]]

[[Image:pdf.png]] [[Media:journal.pone.0120991.PDF|Complexity Measures in MEG: Measuring "Disorder" in Schizophrenia]]

[[Image:pdf.png]] [[Media:1-s2.0-S2451902217300083-main.pdf| Review: Magnetoencephalography as a Tool in Psychiatric Research]]
</nowiki>
This will format as follows:

Some important review articles on MEG research.<br>
[[Image:pdf.png]] [[Media:1993-Hamalainen-RMP.pdf| Hamalainen, M, et. al, Reviews of Modern Physics, 1993]]

[[Image:pdf.png]] [[Media:2003EncycNeuroSci.pdf| Magnetoencephalography, from the Encyclopedia of Neuroscience, 2003]]

[[Image:pdf.png]] [[Media:journal.pone.0120991.PDF|Complexity Measures in Magnetoencephalography: Measuring
"Disorder" in Schizophrenia ]]

[[Image:pdf.png]] [[Media:1-s2.0-S2451902217300083-main.pdf| Review: Magnetoencephalography as a Tool in Psychiatric Research]]

==== Python Programming in Neuroimaging ====

* [https://www.python.org/ Python Software Foundation (US)]
This site is the central repository for the current version of Python for your operating system. It is also the primary source for python documentation for the 2.x and 3.x versions of Python. The site has a useful beginner's guide and a collection of How-Tos on various topics for python developers.

* Python 3.x reference documentation and tutorial [https://docs.python.org/3/ Python 3.6 Library Reference and Tutorials]
* NumPy, provides an N-dimensional array object [http://www.numpy.org Matlab-like features in Python]
* NiBabel, tools to read and write common neuroimaging file formats [http://nipy.org/nibabel/ Neuroimaging File Formats in Python]

=== <u>Papers of Interest on Electromagnetism</u> ===
==== Scattering Theory ====

[[Image:pdf.png]] [[Media:scattering_rough_surfaces.pdf|E&M Scattering from Rough Surfaces]]

==== Novel Materials for use in Biomagnetism ====
[[Image:pdf.png]] [[Media:Medical_applications_of_diamond_magnetometry.pdf|Medical applications of diamond
magnetometry: commercial viability]]

Lab Status

2021-10-08T21:39:22Z

Tomh: /* Live cam of the MEG Core console (NIH access only) */

==Live cam of the MEG Core console (NIH access only)==

https://kurage.nimh.nih.gov/nih/megcam0.jpg

{| width=512 style="border: 1px solid grey;"
| Image updated every 5 minutes.
|}

'''The main MEG lab phone number is (301)402-2445.'''

Club MEG

2021-10-05T16:13:42Z

Tomh:

Club MEG

2021-10-05T15:46:54Z

Tomh:

2020-10-28T14:26:02Z

Tomh:

2020-09-23T19:56:32Z

Tomh:

==== MEG Data Analysis ====

This section covers all aspects of MEG data analysis. The following pages assume that you have [[afni.nimh.nih.gov|AFNI]] installed and have a reasonably good idea of how to use it.

* [[CTF Tools|The CTF Tools in a Singularity Container]]

* [[Accessing CTF Datasets from Python]]

* [[Time Frequency Analysis|Time Frequency Analysis Tools]]

* [[Head Localization and MRI Coregistration|Head Localization and MRI Co-Registration]]

* [[Source Localization - SAM|Source Localization - the SAM pipeline]]

* [[Fun Stuff - How to make a movie| Fun Stuff - How to make a movie ]]

* [[External MEG Analysis Toolboxes | Other Software packages]]

==== Stimulus Presentation Software ====

'''PsychoPy: Psychology software in Python'''
[http://www.psychopy.org PsychoPy] is an open-source application that allows you to run a wide range of neuroscience, psychology and psychophysics experiments. It’s a free, powerful alternative to Presentation™ or to e-Prime™, written in Python (a free alternative to Matlab™ ).
*[[Image:pdf.png]] [[Media:PsychoPyManual.pdf| Pyschopy documentation for release 1.90.2]]

'''Presentation: NeuroBehavioral Systems (NBS), Inc.'''
Presentation® is a stimulus delivery and experiment control program for neuroscience written for Microsoft Windows.
* [https://www.neurobs.com/presentation/docs/index_html Presentation online documentation]

'''E-prime 3: Psychology Software Tools'''
E-Prime® 3.0 software for behavioral research. ''Build your own experiments using E-Prime’s easy-to-use graphical interface. Design, collect, and analyze data – all within a few hours!''
* [https://pstnet.com/products/e-prime/ E-Prime 3.0 website]

====Miscellaneous Documentation====

* [[Image:adobe-ps.png]] [[Media:SensLayout-275.ps|SensLayout-275]] — a color picture showing the sensor names and relative locations (ps).
* [[Image:pdf.png]] [[Media:SensLayout-275.pdf|SensLayout-275]] - a color picture showing the sensor names and relative locations (pdf).
* [[Image:pdf.png]] [[Media:FileFormats.pdf|File Formats]] - CTF MEG data file format